RNA id: TU12585


Basic Information

Item Value
RNA id TU12585
length 473
lncRNA type sense_over
GC content 0.51
exon number 2
gene id AMCG00004690
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56690719 ~ 56691706 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctactactacaaatagtTGTCGTtgtcattatcatcatcatgatcCGAggttattgattattgattggTTATTGATTACCCAGGGGTGTGCAGCAGGGTGAGGATGCACGCGATCCCACTCCCAAAGCAGACGGACCGCTGGAATGAGAAGCGCAGTGTGTACGGGCTCTACGACAACGCGACTTCAAGGCCCACCCCCGGGACCTGATTGTGGCCCCCCGTTGGCTGAAGGGATTCCGCGGCAACGAGCTGCAGCGCTGCATCAGGAAGAAGCAGATGGTGGGCGACCGCAtgatgacctctgacctccacAGTCTGGAGAAGAGAATTAGCTTCCTGTACCGGCACTTCAACCGATACGGGAaacacagatagatagacaggaagtcagacagtcagtcagtcttttGTGCAATTGTTATTTGTTGGtgtgcttttgcttttgaataAAGAGGGTATACACATTCACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12568 lncRNA downstream 42913 56606421 ~ 56647806 (-) True G10093
TU12535 lncRNA downstream 174305 56515501 ~ 56516414 (-) True G10073
TU12530 lncRNA downstream 198956 56489568 ~ 56491763 (-) True G10068
TU12528 lncRNA downstream 219293 56470522 ~ 56471426 (-) True G10067
TU12522 lncRNA downstream 336313 56353928 ~ 56354406 (-) False G10061
TU12589 lncRNA upstream 20941 56712389 ~ 56714188 (-) True G10108
TU12598 lncRNA upstream 61577 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 70597 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA upstream 85678 56777126 ~ 56778469 (-) False G10121
TU12628 lncRNA upstream 168889 56860337 ~ 56861643 (-) True G10135
AMCG00004692 mRNA downstream 535 56686287 ~ 56690184 (-) False AMCG00004692
AMCG00004685 mRNA downstream 18071 56666929 ~ 56672648 (-) False AMCG00004685
AMCG00004684 mRNA downstream 35634 56653182 ~ 56655085 (-) True AMCG00004684
AMCG00004682 mRNA downstream 179026 56494656 ~ 56511693 (-) True AMCG00004682
AMCG00004675 mRNA downstream 208158 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004691 mRNA upstream 6873 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004693 mRNA upstream 13896 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004689 mRNA upstream 44395 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004698 mRNA upstream 133573 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004699 mRNA upstream 155235 56846683 ~ 56853046 (-) True AMCG00004699
TU12583 other downstream 227 56685737 ~ 56690492 (-) True AMCG00004692
TU12437 other downstream 205871 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 854542 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 1139494 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 1147166 55529663 ~ 55543553 (-) False AMCG00004640
TU12597 other upstream 56343 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 81054 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 85678 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 97304 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 334089 57025537 ~ 57028329 (-) True G10157

Expression Profile