RNA id: TU12583


Basic Information

Item Value
RNA id TU12583
length 2439
RNA type TUCP
GC content 0.47
exon number 5
gene id AMCG00004692
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56685737 ~ 56690492 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGTGAGATGGGGGGGAGGGAAGACAGGATAGTAAATTAGTGAAATAAttgggagatggagagatcagaaaCTAGCATAGTCAACAGTCagtgactgagtgtgtgtgtctctactGCAGTGCGCCCGAGAGAGATCTGCAGTACTGcaagaaagagggagggagagagagtagCGATGTGTGCTGCGCCGTCCCTTCCAAAACAAACGCGCTGCATacagatagagggagagggggactTACGCATAACTGCGGTATACTGGGGTATTACCGACAGACACGCACactgccccacccccacctctctctctctctctctctcactatccAAGACCCGCAACTCCAGTTTAATAGAGGAAAGCCAGCGAGCCGGCTCGTCCGCTCAGTCCCAAAAGCGAGGTGACCGACCGCTGTAAAAGAACGGCGGAGACCCACAAGGAAggacagacagaggcagagagacagactgactgacggTCAGAcggagggagacagacagactgacggACAGAcggagggagacagacagactgacggACAGACGGAGGGAGACGGGGCTGGAGTGCGTTAGTGCGCTCACAGTGCGCATAGTTcgctttcttcttcttcgttTTCCGATTTGGGGATTggaattgattttgtttgatttgttggCGTTTTGCTGTTGATGTGCATTGTGGATTACAAGCCCAACAAACGTTATAAAACAGTTTGGGCCGATTTTATGCTATATAGCTTATACTAAAAACGCGTCGCGTCACTATTGACAACAGCctcctattctctctctctctctctctctctctctctctctctctctctctctctctctctcggataCTTCCCGCTCGCATCCACTGCGTCagcctctctctcgctctccctctccatccctctttctttctctctctctccccactgcGGTTGCGACCAAAAACTGCAGTCTTTGCATTTCTTACCTGCCtatctgtctccctctccctctggcTCTTTCCCCCCTCCTTTCTTCTCCTCTTTTTCGTGGTGTGTTCtagtctttctttctctccttgaattctctctctctcggaatTCGACCTTCCGCACCTCAACCACAGAACCATGTCAGCCCCGGCCCCCGCCCCTGATGCCACGGCCCCCCCTGCTGGGCCCCCGGGAGCCCCAGGAGGAGAAGGGGCCCCCCCAGGACCCCCCAACCTGTCCAGCAACCGCAGGCTACAGCAGACACAGGCGCAAgtggaagagGTGGTGGACATCATGCGGGTGAACGTGGATAAGGTCCTGGAGCGTGATCAGAAGCTGTCCGAGCTGGACGACCGGGCCGATGCCTTGCAGGCCGGAGCCTCGCAGTTCGAGAGTAGCGCTGCCAAGCTCAAGAGGAAGTACTGGTGGAAGAACTGCAAGatgatgattatgatggGAGTAATTTGTGCGATCGTTGTTGGCATTATTTTTCTCTATTTCTTCACTTGAGCTCTTTTTCCAAAGCCAAAGACAAACAGAGCGAACGACAGGGCGAGAGAGTGAAGGAGGacaagaggaagaggaagacaaCGACAAAGGACAAAACTCCGCCTCCTCCGCCATTCCCATCATCTCCCACCGCCATCcacatccctccctccctcctctccctctctctgtttctctcagtAGAGTGTTAGGATAGTATAGTGTACAGTCAGTGTGCCTGTATTAACcttcctctctctatctctctccctccctctctctctttctccctcccgcTTACTTTTGTGTCTCCATCCTATTGTGTGACAGTatcagagaaaaagagagaaagagaaggaacgTATGTATACAGTTATACATGACTTATATggagtaataacaataataattttgtgattgtacattttagtcattttagattctcatttatttatttatttatttatttatttatttatttattttgtttcgaATTGATACACAACAATGTTTAGAAATTATAGCATTTcaaattctttaaaataattcctgtTTATGCAAGCAGTAACTGGAGCCACTATACTATATCATAGTCAGAGTACAGACactatactgtatacatacacttgtactgtatatatatatatatatatatatatatatatacctatactGTACTTTATAAGGTACATTATAGTTAAGTTTATAGGAgttgaattgtattatattacagaTGTAAAGATGTTAGAATaccctctctctatatatttatctctctccctctctccccctatatatatagagagagggggagagggggagagagagatacagaatatatatatatatatatatatatatatatattctatttattgtgtgtgtgttacagggaATTGTTCTGTGTCAGAGgtggagagggaaggaggggggaGAAGAGAATGAGTGACaggagagaagaagaaagagagagagagacagacacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12568 lncRNA downstream 37931 56606421 ~ 56647806 (-) True G10093
TU12535 lncRNA downstream 169323 56515501 ~ 56516414 (-) True G10073
TU12530 lncRNA downstream 193974 56489568 ~ 56491763 (-) True G10068
TU12528 lncRNA downstream 214311 56470522 ~ 56471426 (-) True G10067
TU12521 lncRNA downstream 331331 56353928 ~ 56354406 (-) True G10061
TU12585 lncRNA upstream 227 56690719 ~ 56691448 (-) True AMCG00004690
TU12589 lncRNA upstream 21897 56712389 ~ 56714188 (-) True G10108
TU12598 lncRNA upstream 62533 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 71553 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA upstream 86634 56777126 ~ 56778469 (-) False G10121
AMCG00004685 mRNA downstream 13089 56666929 ~ 56672648 (-) False AMCG00004685
AMCG00004684 mRNA downstream 30652 56653182 ~ 56655085 (-) True AMCG00004684
AMCG00004682 mRNA downstream 174044 56494656 ~ 56511693 (-) True AMCG00004682
AMCG00004675 mRNA downstream 203176 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004676 mRNA downstream 242781 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004690 mRNA upstream 325 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004691 mRNA upstream 7829 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004693 mRNA upstream 14852 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004689 mRNA upstream 45351 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004698 mRNA upstream 134529 56825021 ~ 56836934 (-) True AMCG00004698
TU12437 other downstream 200889 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 849560 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 1134512 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 1142184 55529663 ~ 55543553 (-) False AMCG00004640
TU11906 other downstream 1296798 55382216 ~ 55388939 (-) False G9608
TU12597 other upstream 57299 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 82010 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 86634 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 98260 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 335045 57025537 ~ 57028329 (-) True G10157

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU501504 True 1704 TUCP 0.40 5 CI01000306 11082988 ~ 11098376 (+)