RNA id: AMCG00004699


Basic Information

Item Value
RNA id AMCG00004699
length 1524
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00004699
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56846683 ~ 56853046 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCGGAAGTTGGATCCCACCAATAAGCAGAAGCGAGGGCCAGGGCGGAAGTCCAGGAAGCAGAAGGGGGCGGAGACTGAGATCCCCAAGTTCCTGCTGGAGGagaAACCTGTGCCGAAACGACTGTCCAGCAGGGCGAGGAAACGGGCTGTGAAGAGAACTGTGCAGACCCCCAAGCCCAGCAGCACAGagccagaggaggaggagcagaccACAGGGTTCACAGATGAGAACAGTGACTGGCTGAAGCCGGTCAAGCGGAAGCACCCTGCCGGCGAGAGCCAATCAGAGAGCGAGGAGGAGAGTGATGAGGAGGAACTGAGAGACGACTTTGGAGTCGAGGAGGAGAGTAAGGGAGAGGAGGCggaggaaggagagaCCGTCCTGCCCCTGGACCTGCAGTCAGTGCACCAGCGGATCAAGGACAACGTTGACGTCCTCACGCACTTCTCCTCCAAGCGCGAGCCGGGCCGGGAGCGGGCCGAGTACCTGGCCCTCCTCAGGCAGGACCTGGCCACCTACTACAGCTACAACGCCTACCTGCTGGACAAGATGCTGGAGCTCTTCCCCCTGTCTGAGTACCTGGCTGGCCACTACATGCTGCAGGGTGCCTCCAGTCTGCTGCCCGTCATGGCGCTGGCCCCCCAGCAGGGGGAGACGGTGCTGGACATGAGCGCTGCACCGGGGGGCAAGACCTCCTACATGGCCCAGCTGATGCGCAACACAGGGGCCATCGTGGCAAACGACCTGAGCGCCGAGCGGCTGCGCAGCGTGGTGGGCAACCTGCACCGGCTGGGAGTGACCAACACGGTGGTGAGCTCCTATGATGGGCGCCAGTTCCCCAAGGTGATGGGAGGTTTCGACCGGGTTCTGCTGGATGCCCCGTGTTCCGGAACTGGAGTGGAGGAGAACGAGTGGGTGGTGGACTACGCCCTGAAGAAGAGGAACGTGAAGCTGGTGCCCGCTGGCCTGGACTTCGGGAAAGAGGGCTTCACCAGGTTCAAGGAGCGCCGCTTCCACCCCTCCCTGCGTCTCTGCCGCCGCTTCTACCCACACTCCCACAACATGGATGGCTTCTTCGTGGCCAAACTGAAGAAGTTCTCCAACGCCATCCCTGCCCCTGCGCCAGcgGAGGAGGGCGACCCCTCAGAGAAGAAGACAGAGGCAGGTTCTGCCCCAACAACCTCTCCCATGcaggggtcaaaggtcacgGGCAAGAGGCAGGTGCCACAGGGAGAGATGGGAGGAGAAGGAAGGGTGGCGAAAAGGGGGAAGGAGAAAGTCAGCCAAAAAGAGAAGCAGAAGAAAGAGGTGGCTCTGAAGAAGAAGCAGGAACAGAAGGAAgacaaggaggaggagggagaggagggaggagatggtgtgaaggagaggaaggagggagtGAAGGGAGGGAACAGGTTTGAGAAGAGGAAGAGGGTGAGCTCTGTGAAGAAGAACAGAATGggtaaaaacaaattcaagaaGTTTAAGAAGATGCAGAAGAACCCAGGTGGCCAATGA

Function

GO: NA

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12557 lncRNA downstream 25897 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA downstream 68214 56777126 ~ 56778469 (-) False G10121
TU12598 lncRNA downstream 92292 56753025 ~ 56754391 (-) True G10116
TU12542 lncRNA downstream 93748 56665059 ~ 56752935 (-) True AMCG00004685
TU12554 lncRNA downstream 113083 56528616 ~ 56733600 (-) True G10082
TU12628 lncRNA upstream 7291 56860337 ~ 56861643 (-) True G10135
TU12555 lncRNA upstream 166249 57019295 ~ 57019807 (-) False G10082
TU12652 lncRNA upstream 172491 57025537 ~ 57028915 (-) False G10157
AMCG00004698 mRNA downstream 9749 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004689 mRNA downstream 108434 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004693 mRNA downstream 140869 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004691 mRNA downstream 144170 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004690 mRNA downstream 154977 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004697 mRNA upstream 3310 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004704 mRNA upstream 44557 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004706 mRNA upstream 80351 56933397 ~ 56956495 (-) True AMCG00004706
AMCG00004708 mRNA upstream 122073 56975119 ~ 56982616 (-) True AMCG00004708
AMCG00004705 mRNA upstream 184441 57037487 ~ 57050034 (-) True AMCG00004705
TU12609 other downstream 54522 56788752 ~ 56792161 (-) True G10123
TU12607 other downstream 68214 56777126 ~ 56778469 (-) True G10121
TU12548 other downstream 71243 56772502 ~ 56775440 (-) True G10079
TU12597 other downstream 95720 56747791 ~ 56750963 (-) True G10115
TU12583 other downstream 156191 56685737 ~ 56690492 (-) True AMCG00004692
TU12651 other upstream 172491 57025537 ~ 57028329 (-) True G10157

Expression Profile