RNA id: AMCG00004708


Basic Information

Item Value
RNA id AMCG00004708
length 1407
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00004708
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56975119 ~ 56982616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATTTGCACATCGTGAGTCTGATTGAGCGCAGTGTGGCTCTGACTGGGCGCAGTTTGGCTCTGACTGGGCGCAGTGTGGCTCTGATTGAGCGCAGCGTGGCTCTGACTGGGCGCAGCGTGGCTCTGACTGGGCGCAGCGTGAGTCTGATTGAGCGCAGTGTGGCTCTGACTGGGCGCAGTGTGGCTCTGATTGAGCGCAGTGTGAGTCTGATTGAGCGCAGCGTGGCTCTGACTGGGCGCAGCCCCAGTAATACTGTAAGCTGTCAGATCTTCAACCTGCTGATGCAGCTGGCGGACAGACAGGAGGATGGGGGGAGGATGGGAGGCCAGGGGGAAGGGAAGGGGGAGACAGGGCAGGGGGGCGTCTCCCTGGACTTCTTGCCCAATCACCGTGGACTCACCCCCCTCAAACTGGCTGCAAAGAAGGGCAACGTGAcggtgagagagacagatagaaagGGAGACTGGACTACAGCTCCCATGGTGCCCTGGGGCATCGGGGCTATTGATTATATCAGCTATGCCTGCATGGTACTGGTCATACTGGTTTTGCGGCTGACCAATATGAGCGGAAACGGGGAGATTGATGTCATGGCACTTGCGCTGACCCTCAGTTGGTGCAACACCATGTACTTTGCCCGCGGCTTTGAGTTTCTGGGCCCCATCGTCGTCTCAATCCAGAAGTACTTCTGGCTGAGTGTCGTGGTGCTAATGGGGTTCAGCTCTGGCATATGGGTGGTATACATGACTCAGAATCCCAATGCCATTCCCGCGTTCAACTCCTTCCCCTCCACCCTGTTCTACGAGTTCCAGGTGTCCGTGGCCATGGTCAACATGCTCGTGGACCCCACCCAGGCCACCCCCGTGGTGGTGTTCGTGCTGCATGTCATCTTCTCCTTGCTGTATTTCATGCTCATAAACAACCTGCTGATCGCCATGGTGTCCGACACAACGTGCAGAGTGGCCAATGAGAAGGAGGAGGTGTGGAGAGCACAGgtcgtTGCCGCCACTCTCATGCTGGAGCGCTGGCTGCCCCGCAGGCTGTGGCCCCGGATGGGGATCAGTGGGCGGGTCTACGGTCTCGGAGACAACTGGTACCTGAGgGTTGATGAGAGGAATGACCAGAATGCACAGAAGATAGGTTGCTCTGCCAACACCAACaatgaggaggaggatgaggtcAAAGAGAAGCCAGACCCCACCCCCTCCGGGGCCTATGTGTTTGGCCCTGGCATTGACCACACCCCCTCCGAAGTGTCTCTCTTTCAACCCATGTGCAGGGGGCGTGGCCAGGAACCGGACATCACCAGGAAGTCCCTGAGGGGCTGGCACCTGATTCGTCGGAGCACCctggggtcaaaggtcacagaTGAGAAGGGGCTGGAGGTGGAGATTAGTGTCTGa

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12556 lncRNA downstream 80500 56683137 ~ 56894619 (-) True G10083
TU12628 lncRNA downstream 113476 56860337 ~ 56861643 (-) True G10135
TU12557 lncRNA downstream 154333 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA downstream 196650 56777126 ~ 56778469 (-) False G10121
TU12598 lncRNA downstream 220728 56753025 ~ 56754391 (-) True G10116
TU12555 lncRNA upstream 36679 57019295 ~ 57019807 (-) False G10082
TU12652 lncRNA upstream 42921 57025537 ~ 57028915 (-) False G10157
AMCG00004706 mRNA downstream 18624 56933397 ~ 56956495 (-) True AMCG00004706
AMCG00004704 mRNA downstream 64852 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004697 mRNA downstream 116513 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004699 mRNA downstream 122073 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004698 mRNA downstream 138185 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004705 mRNA upstream 54871 57037487 ~ 57050034 (-) True AMCG00004705
TU12609 other downstream 182958 56788752 ~ 56792161 (-) True G10123
TU12607 other downstream 196650 56777126 ~ 56778469 (-) True G10121
TU12548 other downstream 199679 56772502 ~ 56775440 (-) True G10079
TU12597 other downstream 224156 56747791 ~ 56750963 (-) True G10115
TU12583 other downstream 284627 56685737 ~ 56690492 (-) True AMCG00004692
TU12651 other upstream 42921 57025537 ~ 57028329 (-) True G10157

Expression Profile