RNA id: TU10256


Basic Information

Item Value
RNA id TU10256
length 1511
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G8307
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49944298 ~ 49945808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAATACATAGTTTACATGTCAGCAGAATAACCTTACACTAACACCAAGCATGACTATGAGCTCTCTGCACTCACTTCAGGCTGCGTGTGCGCATCAGCACTGGGCCCAGCATCTCCAGCAGCTCCTGGGTCAGGTGGCAGGAGGAAAGATTCAGCTCCTCCAGCAGGTGCCTGGAGGGTGCGCTGCTGAGTACAGAGCGCAGCACGAAGCACTTGAGGGGAGTCATGCACACTGTGGACAGGTTGAGGGACTTGAGGGAACAGAGCACCTCGGCTGTGAAGTGTGGGTTCTGGAACTCGTAGAGGAAGAATAGCAGATCCATCACTTCCTCTGGGGGCTGGtgcttctgtctgtctttcaccATGTGCTTCTCCAGGGAGCGGGTGATCTGAGCCACTACCGTGCTCTTAATGGTGCAACCCAGCTGGTCCAGCAGCACCCTGTTCCCGTAGGACAGGAGGCCGCCCATAAAGACAGGATAGAGCTCGAAGGACTCCCGCTCCTGCCGCTCCTTTGGCTTTGGACCCTGGACCCCCAGCAGGCTCTGCTCAATCTGGTCCAGCACATCCTCGTTGAACTGGTCCTCTGTGCGGAACATTTCGGCCGTCATGGTGCGTGCAATCCGGCCCTTGCCGTACCCGATGATGCGGTGGTACAGACTGGGAAACATCTTGACTAGGTTAAAGATGGCAAAGATCCTCAGGGGGAGGAATTTGGAAAGGATGTTGAGCAGGGTGGTCAGGTCTTCCCCGGCCTGCCCAATGGCCTCAGAGGCTTGCTTGCCCACCTTCTCCAGCACCGTCTTCTTCTCCCCCAGCACGACATACAGGGCAGCCAGGTACTCCTGCATGGCCGGGACAGCGAACACGTAGCGcgtctcccctcccccctcctccaggTTGGAGGTCTCCATGCACGGCACGAGGAAGAAATCCAGGACGTCTGTGCGGAATACCGCCAGCTGTCGGAGCTCCTCATCTGTCTTGGTCTTGCCGCCAATCCACTGCTCCAATTCCTTCTCCGAGAAGGAGGTGCGCTTGTTGGTGACTCCATCGTACGCCAGCTTGCCCACTGTCTGAACCACGTGGTGCACCAGGGAGGTGCTCTGCTGTCCAACTTTGTCGCCCCCTCCTCCAAACCTATTGCTACCCTCCAGGACCTCTCCACTGAAGTTAAGCCTCAGGAAGCTGGTGAAGATGCCGGTGAGGGTGCGGATATGAGCTAGGGGATCAGTGAAGTGGAGGAAGTGCAATGTCGCACAGGTCAGCCAACAGTAGGACGGCAGGAAGCAGGCAGCGGCCAGCTGGCTTTCACGTTCTAGATTGAGGTACAACATCTCCAGCAGGGTCTCTGTCTCCTGGCTGGGTGGCCCACTGCTGCCATGTAGCAACCGGCTAGTAAAGTACGCCTTCTGCTGGTCAAGGTTGCTAAAACCACAGATCTGAAAGTAGCGGTCTGTGTACTTGTTGGGGATGCTGTCCAAGGCGGAGAGCCGGGTGGTGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10233 lncRNA downstream 85843 49844582 ~ 49858455 (-) True G8286
TU10228 lncRNA downstream 130244 49811378 ~ 49814054 (-) True G8281
TU10066 lncRNA downstream 519116 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 842386 49101708 ~ 49101912 (-) True G8133
TU9998 lncRNA downstream 896225 48977624 ~ 49048073 (-) True G8118
TU10257 lncRNA upstream 2075 49947883 ~ 49948531 (-) True G8308
TU10258 lncRNA upstream 5042 49950850 ~ 49951534 (-) True G8309
TU10287 lncRNA upstream 38697 49984505 ~ 49988218 (-) True G8335
TU10291 lncRNA upstream 43464 49989272 ~ 49989482 (-) True G8338
TU10294 lncRNA upstream 63972 50009780 ~ 50010015 (-) True G8341
AMCG00004447 mRNA downstream 102778 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 110558 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 121388 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 148114 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 172020 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 96451 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 124727 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 198902 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 224268 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 242884 50188692 ~ 50197647 (-) True AMCG00004465
TU9801 other downstream 2637709 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3056961 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3475864 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3636979 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5422085 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 3053 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 59324 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 725258 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 778059 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2007856 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile