RNA id: TU10257


Basic Information

Item Value
RNA id TU10257
length 649
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G8308
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49947883 ~ 49948531 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattacttattttaataaaaggtcAAGTTGATAGTGACTAGTGTGCCCGAAACTCAAAAACTCTGCACTCACTGCACAGTGTTGATAGTGGGGTGTTCCCTGCAGGCATCCACTAGTTTGATGGCTGCACTGTCCCCTATGGAGTTGTAGGCCACATTCAGCTCCTCCAGCCCTTTGTTCTGCCGCAGCCGTGCTGCCAGCTGCTCAGCGCCCCCGTCCCCCAGGCCGGTGTGCATCAAGGAGAGGTGCCGGAGAGAGCGGTTCCCAGCGAGGGCCTCGAGCAGGCAGTGCGCCCCTGTCTCCGTCAGAACGTTATCACACAGCCTACAGCGACAGAGAAGCAATTATCACGGGAAGACCGAGGGAACTGGGAACAGGACTAACCTGAAGGGATTGACCCTATGtaaaaaaacctaaacacacacaattcacagATCCTGTATGATCTGATGACTTCATTACACACCTCGCTCACTGTTCCTTCTAATGATATGCCAAGGATgttaaaaactacaaaacaagcCACACCATAAAAAACACAGGTGTGTACTAGTACTTCAAAGTCATATTGTTGGtagtgtttgtatgtattgcttatatagtgagggaaataagtatttgatcccctatcaatcagcaagatttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10256 lncRNA downstream 2075 49944298 ~ 49945808 (-) True G8307
TU10233 lncRNA downstream 89428 49844582 ~ 49858455 (-) True G8286
TU10228 lncRNA downstream 133829 49811378 ~ 49814054 (-) True G8281
TU10066 lncRNA downstream 522701 49422644 ~ 49425182 (-) True AMCG00004429
TU10015 lncRNA downstream 845971 49101708 ~ 49101912 (-) True G8133
TU10258 lncRNA upstream 2319 49950850 ~ 49951534 (-) True G8309
TU10287 lncRNA upstream 35974 49984505 ~ 49988218 (-) True G8335
TU10291 lncRNA upstream 40741 49989272 ~ 49989482 (-) True G8338
TU10294 lncRNA upstream 61249 50009780 ~ 50010015 (-) True G8341
TU10295 lncRNA upstream 62385 50010916 ~ 50011421 (-) True G8342
AMCG00004447 mRNA downstream 106363 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 114143 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 124973 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 151699 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 175605 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 93728 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 122004 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 196179 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 221545 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 240161 50188692 ~ 50197647 (-) True AMCG00004465
TU9801 other downstream 2641294 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3060546 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3479449 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3640564 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 5425670 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 330 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 56601 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 722535 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 775336 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2005133 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile