RNA id: TU10258


Basic Information

Item Value
RNA id TU10258
length 685
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G8309
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49950850 ~ 49951534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actttttcaattttattattttttaaataataagcaCAATGTGAGTTGCCAATAATTCATTGCAAGAAGGGGTCGTAACAGTGTGATAGGAATgtaaacaacaaatacaacatttcaAAAACCACTAATTTTCCACATACAAACTTAATTTTCTTAAAACCAACATTAAGTCTCGGTTAGCGTCCGTCatacttttcaaaattaacaaattccaaaaaattaattatttccccAAACATCTCCAAAGACAAACCAAACAATCATAATGCGGTTTGGTTGAAGAATCCTATTGGTATTGATGTTGCTGTACCGAGTGCAActacaacatacacacaaaatcgATGAGTTGGAGAGCTTTGCCTCTTCTAGCTACAAGAGGGCAGCCTTGACCTATTATACTGTGGAGTTCTGAGACCCGCCAAGATACCTTGCTTCACCACTAGTACTGTAATAAAGTGACCATTTCAAATACGGCTAAAACATCCCCAATTTGCATTTGGactaaaaaaaagtaaattaccTTGTGTACATGTGCTTAAACTACTTTAATTTTAGTTCATGGTCAAGTCCCAGCACAGAGAAGAGACTCAAAGCTGTCTTGTATCCATAGAGAAAACTGAGCCGTCATTTAAACAAAGCTGTATTTTTAACTTATTCAAAAAACTGGGTCAGATTCAAATTGACT

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04714 Thermogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10257 lncRNA downstream 2319 49947883 ~ 49948531 (-) True G8308
TU10256 lncRNA downstream 5042 49944298 ~ 49945808 (-) True G8307
TU10233 lncRNA downstream 92395 49844582 ~ 49858455 (-) True G8286
TU10228 lncRNA downstream 136796 49811378 ~ 49814054 (-) True G8281
TU10066 lncRNA downstream 525668 49422644 ~ 49425182 (-) True AMCG00004429
TU10287 lncRNA upstream 32971 49984505 ~ 49988218 (-) True G8335
TU10291 lncRNA upstream 37738 49989272 ~ 49989482 (-) True G8338
TU10294 lncRNA upstream 58246 50009780 ~ 50010015 (-) True G8341
TU10295 lncRNA upstream 59382 50010916 ~ 50011421 (-) True G8342
TU10296 lncRNA upstream 61610 50013144 ~ 50013381 (-) True G8343
AMCG00004447 mRNA downstream 109330 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 117110 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 127940 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 154666 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 178572 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 90725 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 119001 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 193176 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 218542 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 237158 50188692 ~ 50197647 (-) True AMCG00004465
TU10259 other downstream 1258 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2644261 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3063513 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3482416 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3643531 46306926 ~ 46307319 (-) True G7868
TU10293 other upstream 53598 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 719532 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 772333 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2002130 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2113992 52065526 ~ 52065882 (-) True G8760

Expression Profile