RNA id: TU10287


Basic Information

Item Value
RNA id TU10287
length 1562
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G8335
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49984505 ~ 49988218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcatttaaaacagacatctggcttttattttcaaggaataattttacacagaaaatacaatacacttaATCCCATGTCAAGATTTGGTTTTAGATAAGTTTCTTTTGTCAGAACTGATTTTCAAGTTCATATTCATTACTGAGGTTTGAACTGAATATCAGAGTCCTAGACCAGGCAAAAATTAGATGAAAATaattgagagaaaataaataaatacatcataatttTATATTGCACTTTCAACACCCCTTGCTGCCTGGAACAATGCAAGAGTAGTAATAAAATAGctgtttttttgcattatttgattTACTTGATAATAAAAGTAATGTAGCCTCTGGCCACATgtaagattttctttttttttttttttttacagtgtatttggGAAAAGATGCGTCAGTCCACCATTTGAGATTAACCCCCCAAATAAGACAGAATGCCTCAATTTTATATTTCCACAGAGAAAAGGATGGACAATATTGGAATAACTCAgttaaaaaaatgctaatacACAGCACTCTCCTTCAACAGCACATATTTTATTGGATCCCAATGAGAGTTGGAAATGGTGTCGAGTTAATTTACAAAGCTCAGCAGAAAAATTACACAGAACAGTTCGGGTTTACACGTTGTATCCTATGAGGCTGCCTTTGCCGATGATCTCTCCAATGTAGAACCATAACAGCACCTCTGTAGCAACCAGACCGTTCCTCAGGGCATCCTGGGAGAAAGATAAAGGAAACGTTTAGGTCAACAACAAACCActtatacaaagaaaaaaaagatcaaagtaTTTCAGACTTATATTTGAATGCTGGGAAAACGAAAATCCATCAAATGTGATACAGCACAATGACAGCCATGGCCCTTTATGGTCCACCGGTGGCGTTTCTCTCTGCAACGTATACCTTGACTGTGATCTGGGAGAGACGGCCAGCCTGGAAGGATTTAACCAGCCCCTTGGCACTCTCGATGGCCTGGGGGATCTCtgcaggggtggggggcacCAGCTCAACCCGGGCGTAATGCCAGAACGTTGCAAGCCGCGGCTTGGAGTAAGTAACAGCAGCGGAGAGTTTCTTCATACATCTCAGTCTGGCCTAAGGATGAAAACCTGCAGAAAAGATGGTTAGACCTGTTAAAACAATTGAACAACTAAAGAGCGCTCACCGCCTATGAGTTTAGGTGTCTTGGTGACCACGTTTTTAACGAGTTTCTGCGCCGCCTGAGCCATGATGTCCAGTAagatttgattattatttctttacaaaacaactCCCAGTCCCTTTTCCCGGTGCCCAATCTGCCTGCACTGAATGTCACCTCCACTGCAAGGACCCAGTGAATTTTGGCGTCTACCCATCTGCCTGAATTAAAACCGAATGCCTATTGCCATTTAAGTCACAACCAACTATACAGCGCGCCAAATTAACTGCGCTCCACTGGGTTGGttggatacatttttgttattattgtaagtaTTGTTCTATATcattatgaatatgaatgaattGGTCTTTGGGGGAACTCAATCTGTCAGGCATTTTCATGGGCATTC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10258 lncRNA downstream 32971 49950850 ~ 49951534 (-) True G8309
TU10257 lncRNA downstream 35974 49947883 ~ 49948531 (-) True G8308
TU10256 lncRNA downstream 38697 49944298 ~ 49945808 (-) True G8307
TU10233 lncRNA downstream 126050 49844582 ~ 49858455 (-) True G8286
TU10228 lncRNA downstream 170451 49811378 ~ 49814054 (-) True G8281
TU10291 lncRNA upstream 1054 49989272 ~ 49989482 (-) True G8338
TU10294 lncRNA upstream 21562 50009780 ~ 50010015 (-) True G8341
TU10295 lncRNA upstream 22698 50010916 ~ 50011421 (-) True G8342
TU10296 lncRNA upstream 24926 50013144 ~ 50013381 (-) True G8343
TU10298 lncRNA upstream 26172 50014390 ~ 50014752 (-) True G8345
AMCG00004447 mRNA downstream 142985 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 150765 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 161595 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 188321 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 212227 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 54041 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 82317 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 156492 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 181858 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 200474 50188692 ~ 50197647 (-) True AMCG00004465
TU10259 other downstream 34913 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2677916 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3097168 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3516071 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 3677186 46306926 ~ 46307319 (-) True G7868
TU10293 other upstream 16914 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 682848 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 735649 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1965446 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2077308 52065526 ~ 52065882 (-) True G8760

Expression Profile