RNA id: TU10295


Basic Information

Item Value
RNA id TU10295
length 506
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G8342
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50010916 ~ 50011421 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTTCTGTTGCTGACGGAGCGGGGTTTGGTGGCGGGGGCTTCTTCTTGGGTTCACTCGGAGGGGTTTTGGTGGATCCCTCCTTTTTTGTGGGCATGGGGCTGGGCAGGGGCTGCAACTGTGACTGCTGCGGCTGCGTGGGCTGAGAGGGGGTGCTGTGGGACTGACTGCTCAGAGTGGGGGGCTGCTGTGGTTTGCGCTCTTTCCTGGAGCTAGCACTACAGGGTGCGGCAGGCTGCTTGGGGTCCTGCAATGGAGCAGAGCTGGGGGGCTGGGAGGCCTCCTTTTGCACAGGGGCAGCTGGCAGAGACCCAGgctgttgtttctgtttcagtttctcTTCACTGTGCTTGGAGGGCGGGGTTTCACCCTTCTTGTGAGCAGACTCCTCCCTAACAGGAGGAGGGGCTGATTTCTGATTGGTCTCTGTCGAGTGAGTCTTGACGGAATGATGTGGCTCCTTTTTTTCTGGCCCTTTggtcttcttcttctctttctttgctgCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10294 lncRNA downstream 901 50009780 ~ 50010015 (-) True G8341
TU10291 lncRNA downstream 21434 49989272 ~ 49989482 (-) True G8338
TU10287 lncRNA downstream 22698 49984505 ~ 49988218 (-) True G8335
TU10258 lncRNA downstream 59382 49950850 ~ 49951534 (-) True G8309
TU10257 lncRNA downstream 62385 49947883 ~ 49948531 (-) True G8308
TU10296 lncRNA upstream 1723 50013144 ~ 50013381 (-) True G8343
TU10298 lncRNA upstream 2969 50014390 ~ 50014752 (-) True G8345
TU10299 lncRNA upstream 4118 50015539 ~ 50015785 (-) True G8346
TU10300 lncRNA upstream 8403 50019824 ~ 50020024 (-) True G8347
TU10303 lncRNA upstream 21975 50033396 ~ 50038355 (-) True G8350
AMCG00004447 mRNA downstream 169396 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 177176 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 188006 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 214732 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 238638 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 30838 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 59114 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 133289 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 158655 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 177271 50188692 ~ 50197647 (-) True AMCG00004465
TU10293 other downstream 2222 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 61324 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2704327 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3123579 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3542482 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 659645 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 712446 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1942243 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2054105 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 2056632 52068053 ~ 52071586 (-) True G8761

Expression Profile