RNA id: TU10296


Basic Information

Item Value
RNA id TU10296
length 238
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G8343
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50013144 ~ 50013381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGACTCTCTTCTTCTTGGTGGGCCTTGTGGGGTGGTTGGGTCCCAGGCACTCGGGGTGATAGCTGTTTCGGCACTTATTACACTCCAGTAACTGCTTGGTCTTCTGGTGCTGGCGACCACAGACGTGACAGAAGCGGCAGCGCCGGCAGCACCAGTTCTCCCACTGCTCCTGGAGGGGGCGCTCGGTCTCATCTAAGCAGAAAAGATGGAAGGGCTCGCAGCACACCTGGCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10295 lncRNA downstream 1723 50010916 ~ 50011421 (-) True G8342
TU10294 lncRNA downstream 3129 50009780 ~ 50010015 (-) True G8341
TU10291 lncRNA downstream 23662 49989272 ~ 49989482 (-) True G8338
TU10287 lncRNA downstream 24926 49984505 ~ 49988218 (-) True G8335
TU10258 lncRNA downstream 61610 49950850 ~ 49951534 (-) True G8309
TU10298 lncRNA upstream 1009 50014390 ~ 50014752 (-) True G8345
TU10299 lncRNA upstream 2158 50015539 ~ 50015785 (-) True G8346
TU10300 lncRNA upstream 6443 50019824 ~ 50020024 (-) True G8347
TU10303 lncRNA upstream 20015 50033396 ~ 50038355 (-) True G8350
TU10314 lncRNA upstream 53017 50066398 ~ 50069172 (-) False AMCG00004457
AMCG00004447 mRNA downstream 171624 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 179404 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 190234 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 216960 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 240866 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 28878 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 57154 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 131329 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 156695 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 175311 50188692 ~ 50197647 (-) True AMCG00004465
TU10293 other downstream 4450 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 63552 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2706555 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3125807 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3544710 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 657685 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 710486 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1940283 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2052145 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 2054672 52068053 ~ 52071586 (-) True G8761

Expression Profile