RNA id: TU10303


Basic Information

Item Value
RNA id TU10303
length 4936
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G8350
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50033396 ~ 50038355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtgcatagaaaataaacatgattagAAACTTTCctttttacaaatatgtacaagtttttttattattattttacattcagtcTTAAgtagtttttcagttttctttttttttttcttaacggTCTTTCCTTCATTTGTGTGATATGAGATAACACTGATGAGCTACAAATCCCatagaaacaaaatgttattactGTCATTCTCAGCATCGCCATGGTTGCTATGACCACGCTGAGGGCAGGGTGTTGTGGCAGAAGCctagaagctgaaaatgttcACGTGGGAAATACCAAAACAGAGTACTGGTAACAGGccatagaaaaatatgtatcttcCCTTTTTCCAAACTCCCTCCACCCCGTCTCCTCCGCCTCTGTCACCTATCGAGAGCGATGCTTTCCTATGAAGAGTGGAAGCCTTTAAAAGTTACACTTACAAAAGTAAAGTTTTTATTCAAGGGCCAGTCAGGAATCTACCCTGCACTGCCACTGTATCGAAGACTAAAAAAgacttccaaaaaataaataaataaaaataatatatacatatttttttctatttataaaatactacatacaaatgaataaaaactacAACTGAAATCATATCTCTGAGAAGGGTGGAGTGGACTGGATACAAGAATTGGTGGGAGATTTTTTAGAAgagagtgaaaaaaataaaaaaaataaatgaaaaggctCTGTCTTTTCTATGGCCCTGACTATTCAACTGAATTACCGCATAAAGTAAGCTGTCTAATATAAGAACCtcgtaaaaataaaaaaataaaatgtacaaataaaatcataataaaacaacattcattTACTACAAGAAAAAACACGAGAATCAAATGGTTGATCTCAACAAGTACACAAccacattatacatatatatatattttataatataaataacgttccttaaaaaaaacaaaaaacaaaaaaactgcaaccAACCATGACAAGGCCATTGCAGACACAGGAAAACTGGTACTGGGTATTAAATACAAGCTTCTGTACGAAAGATCTAGGTTAGTTGAAACTGTAACACAAAAACCATTATAGAGTACATTGAAAGATGCATTTATCCTTAAGTAAGCTGCTGTTTTGCTAGTTGTAACTAACTTGTTTGTCCATTCCTTATATTGTGTACATACTGAAGTACGAgttactatttatatttatatatatatatatatatgtatgtatgtttatgtgtgtatatatatatagtataactGAAGATGTTGGGGAGCCACTGGTGTTGTGAGGCGACATGAGAGACTGCTGTTTCTTATCCATGTTGTGTTGCGAACGTTGCTTCTCAAACTCAGTGCCCTGCTGGGAGAGGTTTTAGAAGTCCGAGAGGGAAGGGTTTTGTAATATGGCATTGAAATGGATCACAAGAGGAAAGTCTTTGACTAAGCCCTTAATAATATAGTTATTGTTGTGGTATAATTATTAGTCTGTTTCTTAGTGAGCTTAACAGACTCACTAAATGCCTTGATTTTACAACCTCACGAAATGCAATTGATAACTTGCTTCgccctttttgtatatttcagtttaaacaaGAGCAACAAATGCAGGTcatgttattgtaattattgttagtcttaaatatacattcaatAGAAACCAAGCTGCAGAATTCCCTTTTAAACCCTGACTCAATGCAGGCGGAGTGAACGGAggtgggttttattttatttttttaaaccagttgACTGTGACTGTATCCCTGAATTAATTCAGACTCCTAACCTGAGCTGTCTCGAGTtctgaatttgaaatttgaGTTTCTTGCTCTTTCTGGGCAAATTAAGGTGTTGCTTCACAATCCCTTACCAAGACTACATTAGTCCAAGTTCAAATGGAACCACTGCCTTGTTATGagcaaatacaataataaaaaaaaaactatttgaggAAGCTGCATAACAGTCTGTAAAAAAGCTTTTCTAACataactacaaaaacaaaaaacaatgaaacaaagagGTCCCAACTTTTAGACAGGCCTTCTTTGCATTGTAAGTGCTATACTAGATGCCACATATGGGTTGAGAACATGggcagaggtcagaggtcgtGGAATTCTGCATCTCCTTTCCTGACatcaaatatacaaaatcataaaaaacaaacaacaaaacgaAAGAAAACAAACGACTCAAAACTGGCCTGGAATGCTCTCTTCTAGATTTCAAAGCAGCACGGTGCACACAGCAGCATTTGGAAACGACGTAGTTCTCCAATGTTCGTTGGGATAGGGCCTCTTCTTTCATCGCTGGCTTGGCCTATCGGACACACTGCTGAGAGAATTCGAGGGTGGCGCGGTACAGATCAGCTTTAGAAGCATAGGTACGTTCTTTGACCAACTGAAAAAAGACTGTTTTTCTCAGAGGTTGAGTGTTGTTTCCATTGTAACTTAACCTGATGggtttattagtagtagaataAAATCTCGCTCCCTTCAGTGCCGGGTCAGCAAGCCCTGAATCTGCTTGTCCCTCGGCTGGCGGGCTGAGGAggtgggggaaggggagggTTAGGACCCTTATAAAAAATGTTGGCTCATTAACTCTCGTCTAATAGCttggcggcagcagcagcatcaacGTCAACAAGAGAGGTTTCTTTCCCCGGTTTGTTGTTCTCGTTATTAAGGCCATATGCAATAGTCTTGGTTTTGCAAGGAACCAGACTGTGAATTAGAGAAAACTCACAGACTCACATAACCTCCCTTAAATCAGTCAAGGTTTCTTAGCTCAGCTCTGGGTGTTCAAGATTTGTGTTTGATGTTGTAGGACAAGACCTTCACTGCTTCTGGATGTCGTATTTTGAGCCTCCTAAGATACTGCGAGCGCATCTAGATCCACTTACAATATAGAATCTCTTTTGCAAACTCAAGAGACAGGAATGAAAAGTCACCACCCTTGGACTGAAAGGCAGAGGAAGAGCTATTTAGTGGATGCCTTTTGTTATTTCTCGCAGGGTTTCGTTTGTTGCCTTGCAGATCCCCACCTGGGCTCAGAGCATTCTCCCGTGAGGTTTGCCCTCTGTGGGGTAGGGAGGGACAGCAGTCCGTCaagaaacatataaataaataacaataacaaaaatacaggaAACTCAAGTGTGAACGGAGGCCACAGTTCATGTCTCCAGTGCGCTGCTGTACCCTCCTGCAGTGCCGAGTCAAAGACAACAAAAGTTTTTCCAGACTGTTTCAGTGCACTGAGAGTGATCTGGACCCCACACCCCCCTCTCCCATTCTCCATCGTGTGCCAGCGGTAGTgctttctgattttcttttagTTCGCTTTGAAACAGAGATGCATTCCCTCACACTTGCCACGGAtctggaaacaaaattaaaaacggGGGAGAAAACGAAACAATACACAACTAAAGACGGTCCCGAGCTTCTCGAATGTAAGCCATTGTAATTCACCGAGTTCAGCTTTGagaagaaatgcattttggaCAAAAGAAGGAGCTCCATTCTGCTCTCAAAGAAGGGAACGGAAAGGCAGTTTGTACTAAATGCTTTCTTGTAAATTGTCCATTTCTTTAGTCCCGTTTATTATTAAGGCTGCAACAAAGGCCAATCCTATTCCGTAGAAATCTGCATGAGTGGGCTCACACAGTACAACTATGAGCTTTCCCACCTACAAAGATTAAACTACTCCACAACAACTATTCACGCCATCAACGATTACTCAATATGTCTGcagttaattaatgaataaacgAACAAAGACAGCGTACCAGGAGCCTGATGGAGGACTGAAAACTGAGCGAGAGCAACAGCCGGTATGTTTGGAACTGAGAAAACCTCAGGTCACATGACTTTAAGaaactaacaaaagaaaaaaaaatacaaaaacacacaaaaaaaaactaaacaaaaacaagatctATAAAATTCTCGACCAAGCATCAGTATTAGtaaacttttttgtttcctaCAAAAAATGGaccttgttaaaataaatacaacttgtttctcttaaaaaaataaatacaatcattaaGTGCTTCTCACTTTTAAGTGCTTTTTGTCTCACgtatagaaaaatatacatattatttacatttaaaaaaagagaacatgagtattttcattaaaaaaaatattaaaatcaagcaGATTAAGAGAGAGTGAGCTAAATGACTCAGTCAAACAAGGTCAATGGATATTTCCAAGtatatctgaaaatgttttggcagtttttcttttttttttatgagttgTGAAATAGTACAGAAATTAAGCTTAttacctgaaaaaataaatatatgaagagAAGAtccttttaaaagacaaatactCTTCTTTAaacactgctgtgctgtgtcagtgTTGAGCTTTGGCGCTCAGACCAGAGACTAAGGTCCATTTCAGACTCGTGTTACAGTCTGGATCAGGAGACTCAAACAGAGGGGGGTGACAGGACTGTTTCATCCTGAGTCCCTGGGCTCTCGCTGGTTCCAGCAGTCTGGAAGGAGATTCCCCACTGTCGCCCTACCCCCAGGGAGAGTGTGAAGATGTTGGGGATGAATCAGAGTAGATGGCTTTCTATGTAATCTGTTCCTATGTcgacttaaaacaaacaagcaaatgaaAGAAGGAAACTGTGCACGTCCCTTAGCTTCCAGTGCTCCACAAGCTcctttcacctttttttttgcCTACTGATTTCTCTTGACTGAGTTTGCCTGCCCGTCTAGCGCCTGCTGAATTTCTAACTTTAAGTACGcacattatcattatcaatattattattattatttaaaaggaaataaaatctaCAGCTTTCTTTTATAGGGCTTCATTAGGGTCACTTTGtgctccctcgctccctctagtgtttaaaaacaaacaaacacacactggtCTTGACTCGTCTGTCAAACTAggattaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10300 lncRNA downstream 13372 50019824 ~ 50020024 (-) True G8347
TU10299 lncRNA downstream 17611 50015539 ~ 50015785 (-) True G8346
TU10298 lncRNA downstream 18644 50014390 ~ 50014752 (-) True G8345
TU10296 lncRNA downstream 20015 50013144 ~ 50013381 (-) True G8343
TU10295 lncRNA downstream 21975 50010916 ~ 50011421 (-) True G8342
TU10314 lncRNA upstream 28043 50066398 ~ 50069172 (-) False AMCG00004457
TU10312 lncRNA upstream 28129 50066484 ~ 50070801 (-) True AMCG00004457
TU10333 lncRNA upstream 89417 50127772 ~ 50135731 (-) True G8370
TU10376 lncRNA upstream 173837 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 630591 50668946 ~ 50674553 (-) True G8500
AMCG00004447 mRNA downstream 191876 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 199656 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 210486 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004444 mRNA downstream 237212 49775924 ~ 49796184 (-) True AMCG00004444
AMCG00004440 mRNA downstream 261118 49768277 ~ 49772278 (-) True AMCG00004440
AMCG00004456 mRNA upstream 3904 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004457 mRNA upstream 32180 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004460 mRNA upstream 106355 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 131721 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 150337 50188692 ~ 50197647 (-) True AMCG00004465
TU10293 other downstream 24702 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 83804 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2726807 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3146059 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3564962 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 632711 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 685512 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1915309 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 2027171 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 2029698 52068053 ~ 52071586 (-) True G8761

Expression Profile