RNA id: TU10333


Basic Information

Item Value
RNA id TU10333
length 7491
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G8370
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50127772 ~ 50135731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcattgttttctttcaaaatgacagtaaaaaacaagagaaaacaaaaatgcaagcATCAGTTCACAAGTACATCTTAATTTACacacatttgcaaaaacaaaccgaaaatataaaaaaatcataattaatgGATTGAATGTTTTAACAGTCTTTTACACAGGTACCACTGGTTAGAagagatctttaaaaaaaaaaaaaaaaaaaaaacttgtgggGGGTTAGAAGAGAGGAGTTGAGATGTAATGTATAGCTtgtggtgtgtatgtgttgggGGCGGGGTATGAGAATAAACTGCAgatcaaaatattacatttaaatgtgttcattttttcattgctttacttctatttgtttatttaagtttaagTCAATGAAATTCTACTAATCATTATATGGTGTCAATAGAATTGTATGTGGTATCAGGtagtcagaattaagcatataaaataaactaaccccccttttgtttatttaggtctggatttaaaaaaaaaatgccaatcgcaaagcaaaaacacagaatGTAACGGCTGCATTTTATTTCGTACAGACATCCTGCTTCTTTCCAATGGAAACCCatgatcaaatgcatttttttattttgttttatgtgattAGCCTCTGTGTCAAAGTCAGTTTAATCTGAATGTCATTTATGAGCCGGACTGAATGGCAAAGAACAGGGGGTCAAGTGGTAAGATTGGTACAATTCGCACCTctacctctgtctctctgacccCCTCTTTTCCTGAATTGAACAGTTccacacaaaaagaaagaatgaaaaaggcaCAGTTTTACTCTTTTCTATAGTCTTACCTCCCACTATCCATTTTTCTTTCCTCACACACATTGTGTTTCCTGAATTCAATATGTCACAGTCAAACCTCGCTCTGTGAATATGTATAGACCATACAAACACTGTTCTGGGTCAGGTGTAGTAATGGAGAAGAGATTGTCACTTCCTTTTCTCGCCTTATCGGAAACTTTCCAAGGCAACCCCACTGGtagcttttgttatttgttCTAGGGCTTAGCGTCCCAAAATGTATCAGTTTATCAGACTACTGACCTTGACAGCTGAATCCAATGCCCTGTATTTCAGTGAACCACTCCGGTTTAGGTCTGTTATATAACAGACGAGGCTTGACTGAAAGACACACTAATAGTCAGGTGAGTAGTTTTGTGCTTTTGGAagtatttgttaaaaacaagATTCAATGAATAAAAGTCAACAGTAGTATAAACGAAAAAgccatctctctttctttaaaCACACTTTCATGTAGACTGTGTATCCAAAAGGCTTCTAATTCCCCATTTCTTTCAAGTTGTGAACTCAATTATTTCTATACTGCAGTATAGTTTTCTTTCCAAGtagtgtatttaatgttattgcaAACATGATATTGGCTCTTGGTTGTCTCCCAAACTGGAGCCCAGGGCACTACCTCTGAGCCCACGAGCACAATGCAGCCCGGCACCCAAAGACAGGCGCAGGAATCATTCTGCTCGGCAGTCAAAACCTCAGTcataaaaatgcaacatttcatCTCAAGATTAACTCTAGTTTTGGGTTGAAGCCCGttctcttaaaacaaaaacaaataaaaatatttcagtgctaCTAATCTCtcaacaaaacataattattgaagaacaaaaaaagtgtgACATCCCGCAATCCGAAGGTATTCTAGAATACGATGCTATCTTTTTGACGAACAAGGCTCAAACTTGTCTTTTTAAGCTGAGCCACTACTTATTCTAGACttttacagtataaatatttacaaacattaCAAGCTTGACAGTAGTCCATAGCAATAACTGACATATTTGCGCTGATTTTAAGGATTCGCCTCAGTGGCGCAGTAACAGCATAGAAGAACACTTTTGTGGTCGACTAGGGGTCCTTGTCTGCAAAACAACTTCCTCCAGAGacccttaaacacacacaactctGTGCTGTGGAGAACTTAATTTCTCCCTCACTTTCTTCTGGACTTCTTGTTTCGATATTTAGTTTTCTGTCTCTTCCTGTTAATGCCAGAAGAGCTGACACAGTGGAACTGAGAGACCAGGTGACTCGGACAAAAGCCAATCAGTAAAAGGTTACATAGAAATTTAAAGCTGTCTCGACAGGTTTGGGCTTGGTGgatgtatttttccattaatttcccAACTTTTATGGCAGTACCTCTTGTGCCATGGTTTTTCCAACCTATCCAACAGCTGCCATGCATTGGCGCTTGGAGTCCCACAAAGCTGAGCTGCTTTACAGTTTGCTCCAATAGGTCAAATTACATGGGAGCGAATATCGTCCACACTGACACAGCCCTTTACGGTCTCTGGGGTACCCCAAACTAATTTCACctgaatatatttcacatttctccGCATGCTGGGGATACCTAGAGagtctttcttttcattcatcCGTGAATTAaccaggatttaaaaaaacaaaaaacaaccaccaaaaaAACTGACAAGTAGTCAAGACGTCTCTTAAAACAACAATGAACATTCAGAGATCATGTTCCCGACATTATGAAGGCATTCACTGGGTGATGAGTTGCCACTTCAATATTTGCTTCTCTGTTCATCAAAACCAAAAGAGAACGTTTGCAAATAATCTATTACAGCaaattgtatatgtgtgtagaTTGTATGTAATGTGTGCTTCCACTTTAGGGAGCCCAGTAAAGATACATTAGCGTGTACTGGAGCTAAAAGGTTTTGTGTTGATTATGCATCAAGAAGGATGAATAGGAGGGTGGGAAGGTTCCCCTAAATCTTCACagataaggaaaataaaaactgccaaGCTAGGCTGGGAAAGCAGACATCGCAGGTTCCTCAGGGAAAactgcttgttttgtttattaaaccaACACACTGCAAGCAAACGCAGATGCGTCAAGTAGCCTCCTGCTGGTTGCTATATTCACACATGGATTTCCAAATTAAGAGTATTTTCCAAGCCCCCATGCAAAAGACTTTTGTTACAGTAATGATGcattaaatacaacaaaagtGGTGGGGTTGTGGACGGTATATTTATGCCAAATCCTCATACAATTTTGTTAATAACTAAATACAGTAAAGACATTGTGTCATGGCCAAGCTACGTGATTAAATGTCAAGTAAAAAGGAGCTGGTTTTGCAAGATGTCTTTAAGCAGTTTCTTCATCTGGGGCATCTATGCGTGTTTGGTAAAAGGCACTGTGTCTCCAGTCATGTCTTCAGTGTGGGGAGTTGGCGACGGTCAGTCCCATTGGGGCGCACAGTGTTTATTGTTAATCAGCTCACTGCGAAGGAGGGTCAGGTTGCTGGGATAGTAGAGCAGTAGTCGGTAGGATATGAACATGGAGGACGATTATCAAGGCAGGCAGGTGGGATTTTGTGACAAACCTGTCTTTTCCATTCGTTATCGTATCTCAACTACTCAAAAACTGtgtctgtaaaataattgtatgagCAGGTGAAAGCGaactaaaccaaaaaagtaacaaattTAGAAAATCTGCCACGACTAAAGTTATTGTTGGGAGTCTTTTAAACTTTTTCTTGaaaggttattttaaataactaaatatatatatatatatatatattttttttttttttttcataagaacaacaaaaaaatcatcatcACTTATACTTATTGCCAGGAATGGCACTTGAGCTGAAAAGGGGGGGATGACATATTCAAACAATCTATTTTCCCTGTCTAGGATAGTATTTCAGTAGTTCTTCTCTGACAATGGCCAATATAAGCCTCATAATTTAAATCTTGGAAGTGGACTAGGCAGGGttgtgaatatatttacaaaagctCAGTCTTGATCTCGATTTGCTGACAGGTATCACAAAATCACACCTTGCGCACGGCCTGAGGTACAGAAAGAGCCACATTCGGTTTCCTTACAGCTCTTCTCTTCCTGGTCTCAGTTCCGCAGGTCGATGTACTTCTCACACTTTACTcTGGTTATTAGGCGGTTTCTTGTCACCATTGACTCCCTGCAGCAGCCCAGCCTGCTCGTTTGACTTTTCTGCCTTCAGCTCCACGACGATGTCATCTTTACTGGCCTTCTCCTTCGTTCTGAGGAGACAAATCAAGCGGTGTCATTGCCAGGCCTGCCTGAATGTCTCCGTAGTTGGTTTTATCAACTGCTTcgtgtgaaatgtgtttttagcaGGGGATAATCAAAAAATTGTGTATCGGCTGCATGTTATCTTCTGTGGCTATGACTTGTGGGATTTGTCTTCATGCTGGCCAATGAAGCGTGATTAATGAATGCAGTAGCGGATAAGTTGACACTCACAAATCCTGCTTCCCCGAGCGGCCACAGGGGATCTTGCCCTTCTTGTACAGGAAGTAGAGCACACTGCCCAAGATGGCAAGGAGAAGGATGCACACAATGATGACCACGATGATGACGCCATTACCCTCTAGAAAAGCAAAGACAACAGAGGTTAGTTTTGTGTATCTGTATCAACTGCTCACCGTGTGCTGCAGATGCCGATATTGTGGAAGACATTGTACGaactttgaatatatatatatatatatatatatatatatatatatatatatatggatatatatatatatatatatatggatttttatataaaaatccaGTCTATAAGAATTGGATTTCTGTTTCCTTGGTATATTAGAGTTTTGAGTGTTGAACATATTGTTTGCCTCTCCGCTCTGTACTTGTAGTTAAAACTAGTCATgagcaattgtgtttttttttttttactggtttGAAAATAATGGCGTAATTGAATCTGTGAAGCAGGTGGGCTGTTTTGGTCTTAATTCACTAAACTGAACAGCAGGGATTCAGATAAATACAAGCAGCCAAGCTTTGAAAACCACATCAGTCAGACAGAAGTGAGCACTGAAGCGGCAGATCGGTGCGCCTGTGTCTGACAGTCTCTAATCTCTGTTGAAGGCTCGCTCACTCTGAGCACCACTGCCTTATGAAAATAGATTAGGAGCACATGTTCTTGCTACTTTGATAGATAATTTGATGCCTTCCGATTTTGGTTCTCTACTAATAGAAATGAAAGGCTTTCTCAACAGGTTAAGGGTGGGAAGATGCATTTTTCCACTCATTTCCCAAAGTGCACACCTGGACATTGCTCCCGGTTTCTGCCGATTTGTCTGCACAGACGTTACCAGAGATTAGAGACTGCAGTGGAGCCATTCGGTTTCCACTGGTGGAACAGAAACCATTAGAAGACCGAGTGACCGGGGAGGAGGACGGTTTCTGTGATTGCAGAGGTGGCTGAGGTAACAGAAGATAAGAGTCTGGACTCGTGCAGTTTCAAACAGGACAGTCCCTGGTTAATTTCCCATAATGCACTTTGAATGCAAGAGCTCTGTTGGAACAGGAGGCAGACCTGGAATTGCTGCAGAGAGGAGGCAAGGCAAGTAGAGTGTGGTTCAGTCTGCGTGTATTTGGACATGCTtgtggtgagagagagggggttgaAGGAAGGGGGACAGATGTACACacctttcttgtttttcttcatgtggGGTTGTGCTACTAAAACAAACCAGAGGGACACCATTATGTTTCTAGCCCATAGTTTTCCGCCTCATCAAGACCAGAGAAGGAGCCCTTTGTATGATACCTCGTTATGAAGGCAAGTATTGTGCCCCCATCTGCAGTAGGGCCATCAAGATTACAACAGGTCAGACATAATGTTCTAGTGCAGCTTTCATTAACATGAAACTTAATATACTGTTCaaaggtttatttaaatacttttctggATAATTTGTTGCAATAATAGTGGTATAAATAGTCAAACGAATTAACCTGGTGACCTATTGGAATGAACAGAATCTTTCCTAATCCCTCCTCTTGAACTGCTATCGGACACaccaacaaatacatgtattttatattgtgcaTAAGTAGGGCCATTTAAGCCCAAACTGCCTTCTCCCCATCCTTCGTATACCTTTTCTGAAAATATGACTTAGTCGAGcacttttaatttccatttacaAACAGGCTACAGACTCTTGTGGGAATGTATTTATGAGAAGGGAAAAAACGGccataaaaactataaaacgGTGAGCTGGCGCAGTAACACTCGGCAGAAtaacagtggaaaaaaacattaattaatttaaacagtttgaGGTAATGGGGGAAAATTCATTTACCTgagaatttaaaagaaaaaaatgaatagagaTTCCAGCAGCCGGACTTAatctgtgtcagtcagttttCTGGTAATCTCTTCTTTCCtctatcaatttttttttcagccaGACGTTAAAGACCACGGACAATCACACGAGTCACTAGACCTCTTACACCAAAACGCCACAGAAAATCAGCGTGGAGACTCAGAGCTCTGTGGTTCCCCTGTGGTCAGTAAGTGTATGAGGGCGTAGGTCCTCTCTGTAAAATCAAACtcatttatttgaagaaatGAGCACAAGGCATGTGCTTATACCACATGATTtgaataagtgtttttttttttatatataaagtaagtTCCTTTTCCAGTGGTACATTTGGGGTCAacttaatgaaacaaaaatgcagttaGAACAAAGTATCTCTGGGTAACAGTCATGTGACATCCTACAACATCCACAGCGGAAGGATTGCTGacaatgtgaattatttttatttttcctcagaaCGCATGGAAGAGAACCATAAACCGATAAACTCTTCCTCCTCATCAGAAGCCCTCGAAAGCTTATAATTCCATTTCAGTGTGGCAGAggaaactaataattaaaaagctgtaAATCAAAAATGATAAGACTGCAAACAGGTCAGCTCTTACAACGCAGAAACgttacagctgtaactgataACAGCTATATCTGGAGAAAGCCAGAGAACCCAAGAAGAGTGGATTATCTTTTGGtattttctacaaaaaaaagagTGACGGACACATCCAGCCGCCTGTGGCTTGGTCTGGAATTGAGTATTGTAAAagatgataatatatattttccctttaaattgaatgtatCTGGTAATTGCGGAAGCTTACctgtagttgttgttgtaggGGCTGTAGTGGGTGGCTCCAGAGGAACTGTAACACAGAAAAACTGTTATTGTAATTTACTGTACACTTGTTGTAGCAGGACAAAAGACAACatattaaaatctatatttacaAGTGTGGTGGttaatgtgtgtgaatgtatttgtttgtgtcaaATGCTCTGATATTAATGCAAGtagtttttcatgtttaaaaattgTGATGAAACTTtgaatatacataaatattaaatccCGCCCACGGTCGGATTGACACTCACTGGCAGATATTATGAAGTGCTGCGTCATTTCGCCAAGGTCGTTGGTGGCTTTGCAAGCAGCAgtgaggtcagaggtcatcTCCGCAGTCACCACACTAATCACACCTTGCTTGACTTTGCGGTTCATCACCACCTGCCAAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10312 lncRNA downstream 56971 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 58600 50066398 ~ 50069172 (-) False AMCG00004457
TU10303 lncRNA downstream 89417 50033396 ~ 50038355 (-) True G8350
TU10300 lncRNA downstream 107748 50019824 ~ 50020024 (-) True G8347
TU10299 lncRNA downstream 111987 50015539 ~ 50015785 (-) True G8346
TU10376 lncRNA upstream 76461 50212192 ~ 50214639 (-) False AMCG00004467
TU10486 lncRNA upstream 533215 50668946 ~ 50674553 (-) True G8500
TU10492 lncRNA upstream 545899 50681630 ~ 50681962 (-) True G8505
TU10518 lncRNA upstream 558843 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 584712 50720443 ~ 50720925 (-) False AMCG00004480
AMCG00004457 mRNA downstream 55831 50070535 ~ 50071941 (-) False AMCG00004457
AMCG00004456 mRNA downstream 79698 50042259 ~ 50048074 (-) True AMCG00004456
AMCG00004447 mRNA downstream 286252 49839535 ~ 49841520 (-) True AMCG00004447
AMCG00004445 mRNA downstream 294032 49831199 ~ 49833740 (-) True AMCG00004445
AMCG00004446 mRNA downstream 304862 49820555 ~ 49822910 (-) True AMCG00004446
AMCG00004460 mRNA upstream 8979 50144710 ~ 50157745 (-) True AMCG00004460
AMCG00004461 mRNA upstream 34345 50170076 ~ 50182056 (-) True AMCG00004461
AMCG00004465 mRNA upstream 52961 50188692 ~ 50197647 (-) True AMCG00004465
AMCG00004467 mRNA upstream 74252 50209983 ~ 50225826 (-) True AMCG00004467
AMCG00004466 mRNA upstream 95543 50231274 ~ 50234343 (-) True AMCG00004466
TU10293 other downstream 119078 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 178180 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 2821183 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3240435 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 3659338 46468125 ~ 46468434 (-) True G7882
TU10487 other upstream 535335 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 588136 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1817933 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1929795 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1932322 52068053 ~ 52071586 (-) True G8761

Expression Profile