RNA id: TU10492


Basic Information

Item Value
RNA id TU10492
length 333
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G8505
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50681630 ~ 50681962 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcagagcatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtgctccaaggaaagaaaagcggtgaaccggcgacagggttccgggcggccaagactcattgatgcacgtgtggagcgaaggctggcccgtgtggtccgatccaacagatgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10486 lncRNA downstream 7077 50668946 ~ 50674553 (-) True G8500
TU10376 lncRNA downstream 466991 50212192 ~ 50214639 (-) False AMCG00004467
TU10333 lncRNA downstream 545899 50127772 ~ 50135731 (-) True G8370
TU10312 lncRNA downstream 610829 50066484 ~ 50070801 (-) True AMCG00004457
TU10314 lncRNA downstream 612458 50066398 ~ 50069172 (-) False AMCG00004457
TU10518 lncRNA upstream 12612 50694574 ~ 50694803 (-) True G8524
TU10539 lncRNA upstream 38481 50720443 ~ 50720925 (-) False AMCG00004480
TU10540 lncRNA upstream 39217 50721179 ~ 50722312 (-) True G8541
TU10549 lncRNA upstream 49001 50730963 ~ 50736598 (-) True AMCG00004481
TU10560 lncRNA upstream 67056 50749018 ~ 50752724 (-) True G8550
AMCG00004475 mRNA downstream 21294 50640186 ~ 50660336 (-) True AMCG00004475
AMCG00004471 mRNA downstream 390891 50289942 ~ 50290739 (-) True AMCG00004471
AMCG00004470 mRNA downstream 395642 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004466 mRNA downstream 447287 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004467 mRNA downstream 455804 50209983 ~ 50225826 (-) True AMCG00004467
AMCG00004480 mRNA upstream 28877 50710839 ~ 50720588 (-) True AMCG00004480
AMCG00004481 mRNA upstream 50415 50732377 ~ 50738516 (-) False AMCG00004481
AMCG00004483 mRNA upstream 133760 50815722 ~ 50838107 (-) True AMCG00004483
AMCG00004484 mRNA upstream 175984 50857946 ~ 50878635 (-) True AMCG00004484
AMCG00004487 mRNA upstream 339376 51021338 ~ 51025994 (-) True AMCG00004487
TU10487 other downstream 8255 50671066 ~ 50673375 (-) True G8501
TU10293 other downstream 672936 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 732038 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 3375041 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3794293 46884635 ~ 46887337 (-) False AMCG00004398
TU10541 other upstream 41905 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 1271702 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1383564 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1386091 52068053 ~ 52071586 (-) True G8761
TU11033 other upstream 2177080 52859042 ~ 52874108 (-) False AMCG00004529

Expression Profile