RNA id: TU10541


Basic Information

Item Value
RNA id TU10541
length 418
RNA type TUCP
GC content 0.48
exon number 3
gene id G8542
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50723867 ~ 50725353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGATCCTTTTACTTATGGATGTGTCTAGATATGTGTGGGATATCTGTGCTCTCTTGATCGACAATGCTTGTGTCCTTCTGCTTAGTATTCCCAGGCGTCAACAGTGTTGTCTGCCGGAGGGATCCGACAGCAGTTCTCCATGCCCGAGAACATccacctgtctctctcctccgcGGAGTTCATGAGGAACATCAACGAGCATCTTGATGTGATGAATGAAGATCCGGTCGATTTGCAGTTTAATCACTCAGGGTATCTCTTCCTTGCAAGTGAAAGGGGGGCAGAGTTGATGGAGGAGAATTATCGCACACAgagATATGCAGGAGCAAAAGTTGCCCTTTTCTCACCAGCGCAGCTGAAGGAGAAATTTCCCTGGATCAACACAGATGGAGTGGCGTTAGCTTCATATGGTAat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10540 lncRNA downstream 1555 50721179 ~ 50722312 (-) True G8541
TU10539 lncRNA downstream 2942 50720443 ~ 50720925 (-) False AMCG00004480
TU10518 lncRNA downstream 29064 50694574 ~ 50694803 (-) True G8524
TU10492 lncRNA downstream 41905 50681630 ~ 50681962 (-) True G8505
TU10486 lncRNA downstream 49314 50668946 ~ 50674553 (-) True G8500
TU10549 lncRNA upstream 5610 50730963 ~ 50736598 (-) True AMCG00004481
TU10560 lncRNA upstream 23665 50749018 ~ 50752724 (-) True G8550
TU10563 lncRNA upstream 30040 50755393 ~ 50756726 (-) True G8552
TU10621 lncRNA upstream 285465 51010818 ~ 51011143 (-) True G8601
TU10745 lncRNA upstream 1121559 51846912 ~ 51880156 (-) True G8707
AMCG00004480 mRNA downstream 3279 50710839 ~ 50720588 (-) True AMCG00004480
AMCG00004475 mRNA downstream 63531 50640186 ~ 50660336 (-) True AMCG00004475
AMCG00004471 mRNA downstream 433128 50289942 ~ 50290739 (-) True AMCG00004471
AMCG00004470 mRNA downstream 437879 50281745 ~ 50285988 (-) True AMCG00004470
AMCG00004466 mRNA downstream 489524 50231274 ~ 50234343 (-) True AMCG00004466
AMCG00004481 mRNA upstream 7024 50732377 ~ 50738516 (-) False AMCG00004481
AMCG00004483 mRNA upstream 90369 50815722 ~ 50838107 (-) True AMCG00004483
AMCG00004484 mRNA upstream 132593 50857946 ~ 50878635 (-) True AMCG00004484
AMCG00004487 mRNA upstream 295985 51021338 ~ 51025994 (-) True AMCG00004487
AMCG00004492 mRNA upstream 753437 51478790 ~ 51484432 (-) True AMCG00004492
TU10487 other downstream 50492 50671066 ~ 50673375 (-) True G8501
TU10293 other downstream 715173 50005132 ~ 50008694 (-) True G8340
TU10259 other downstream 774275 49948861 ~ 49949592 (-) True G8310
TU9801 other downstream 3417278 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 3836530 46884635 ~ 46887337 (-) False AMCG00004398
TU10795 other upstream 1228311 51953664 ~ 51954532 (-) True AMCG00004505
TU10834 other upstream 1340173 52065526 ~ 52065882 (-) True G8760
TU10836 other upstream 1342700 52068053 ~ 52071586 (-) True G8761
TU11033 other upstream 2133689 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 2133689 52859042 ~ 52860438 (-) False AMCG00004529

Expression Profile