RNA id: TU10836


Basic Information

Item Value
RNA id TU10836
length 1643
RNA type TUCP
GC content 0.46
exon number 2
gene id G8761
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52068053 ~ 52071586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTTCCTTAATCCACAGAGCAAAGAGCCCTGAATCACAGAGACGGAAAAGCTGCGCAATGCATAAATTACACTTCAGTGCACGGGGCAAATCAATCAAAGGACAAAGCAACACTTTTAGCACCATTTTAATGATAAAAGGATAcacaacgagagagagagagagagagaggtgagccGTTGAAACACTGCATGCTAATCAGAAGAAGCTCTTTCGTGCCTTGGACAGTAAGGAAACTCAAATCCGCACGCGCAGCACAGCGGCGATGGGTTTTCTCCTCGTGGCTTTAATCTCCTCCATTCTTCCCGCTATATcgttggtcttttttttttttgtaccagATTTCAATGATGAAAGTCCATTTACGTACCCATTAATCCACTGCTCTCCGTAACTCAAAAGGATAACTTACAGAAGACGTAGCACATCAAAGACACATTGGTCCCAGTCCCTTTCGGttggtttctttgtgtgtgtttgtgtatgaacgtgtgtgtgtgtacgtgtgcaCAAGTGCGTCCCTCAAATTGGTCCAGCCGTCAGATTTCTTTAACCCTCTCTGTCTCGTGCTGTATCCACACCAGCCTCTCACCTCCTTATACACCAGCCTCGACAGCAGCTGCAAAGAGAAGGACGGTTCAGCTCTCTGCGATGCACAGGAGGGAAACAAACCCAGGGACCCACAAATCTGTGTGGACTCCAATGGCACTAGGACCAAAACTACCTCTTTTCTTGTGGGACCTTTTCCTACTACACATTCTCCCATCCCTTACAACTCCAACAAACCGGAGACAAGCGATGCAGAAACCTACCAAACAGGCCAGGATGTCAGCGGTGATTAGCATGTAGAAGACATTGTTCCAGCCGGTGGGAGAGATCAGCCCTGCGAGCAGAGGACCCAGGGCGGCACCTGCAGGCCAGCAGAGGGATCGCACACGTTTAGGCTCGAGCGGAGACGGTGGGTAACGCATATCTCAATGCACTCAGTAAGACATGCATAGGACGCGCCCCCAGAGGATTACTCTTCTCTCACCTATGGATCCAGTTCCGTCGATGATGGCCGTCACGGTGGACAGCGCCTTGGAGTTGCCCCTCAAACATTCATGCGTTCCCTAGGAAAGTAACAACAACCATTATTagttttggtattttaatttccctgctACTAGAGACTCACTATCTACGCCAACAGTGAAGGAAAGGAAGCCGAGACAGGATGGCTTATCTTGGCTCTGTGGTTAAACGTTCTCAGTAAGAGGAACAATACTTTAATCTCCACCGAGTTGTGAACTTGTCCCTTTCATTCTAGGATGCGGTCTTACAACGGGACTTGAAAACGAGCGTTTACTCCTCTCTGTTAACCTCAcaagaataaatgcatttgcGAGGCTTTCACGTGTCGCTTCTGCTACAAATTACTGACATACATAGTAGCGCCTTGTGAAAAACAGCCCCACTATTTTAGAGAGGATTCCTAATAAAGATGAAAGTGTGCTTATTTGTTGAACAGGAACTAGGGGGTACATTGGTTAAAACTAAGGCAATATTATGCCCTTTGACCCTTATAATAATGATGCTTAAACATTCTACTACTGTTGGACATCATGTCTggtggatgttttgttttaaagacgACAACACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10833 lncRNA downstream 2603 52063404 ~ 52065450 (-) True G8759
TU10832 lncRNA downstream 8552 52058736 ~ 52059501 (-) True G8758
TU10745 lncRNA downstream 187897 51846912 ~ 51880156 (-) True G8707
TU10621 lncRNA downstream 1056910 51010818 ~ 51011143 (-) True G8601
TU10563 lncRNA downstream 1311327 50755393 ~ 50756726 (-) True G8552
TU10840 lncRNA upstream 19283 52090869 ~ 52091247 (-) True G8765
TU10845 lncRNA upstream 45294 52116880 ~ 52163082 (-) True G8769
TU10852 lncRNA upstream 96754 52168340 ~ 52168541 (-) True G8776
TU10876 lncRNA upstream 131608 52203194 ~ 52203680 (-) True G8795
TU10916 lncRNA upstream 297653 52369239 ~ 52369463 (-) True G8829
AMCG00004505 mRNA downstream 113713 51942693 ~ 51954340 (-) False AMCG00004505
AMCG00004502 mRNA downstream 149154 51870043 ~ 51918899 (-) True AMCG00004502
AMCG00004503 mRNA downstream 199515 51856858 ~ 51868538 (-) True AMCG00004503
AMCG00004497 mRNA downstream 235714 51817211 ~ 51832339 (-) True AMCG00004497
AMCG00004493 mRNA downstream 540458 51520856 ~ 51527595 (-) True AMCG00004493
AMCG00004517 mRNA upstream 141044 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004519 mRNA upstream 156034 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004518 mRNA upstream 165628 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004521 mRNA upstream 183257 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004522 mRNA upstream 246045 52317631 ~ 52336606 (-) True AMCG00004522
TU10834 other downstream 2171 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 113521 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1342700 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1394678 50671066 ~ 50673375 (-) True G8501
TU10293 other downstream 2059359 50005132 ~ 50008694 (-) True G8340
TU11033 other upstream 787456 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 787456 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 787456 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 827974 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 875226 52946812 ~ 52951387 (-) True G8937

Expression Profile