RNA id: TU10876


Basic Information

Item Value
RNA id TU10876
length 487
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G8795
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52203194 ~ 52203680 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACTTTGTACCACTTCAAATTGGAAACCTGGTTGGGTTGCTCTCGCTCAGAAATATGCTGACTCCCTCGCTCACACACTGCCCCCCAGATCCTCTCAggtctcccccccccctctcttctctcctcgCAGTgtccgtcctctctctctctccaatccTTTGTTTCTCCCCTGTCTCTCCCGGCTCACACCCTGTCCCTGTCCGTCTCCCCGTGTCTCTCTCAGGCTGTGACCGTGGAGCACGGTCTGCGGTCCGAGCTGCGCGCACTGagagaggagtatgaagagaaGGATCTCAGAGGCTCCGTCACCAAAGTCAAACTGGACAGTCTGCATGCAGAGGTAAGACAAGTGATTCCACAACCAAAATATGTTGGCAACCATTCAGGCGGTTTCTAGACAATTGTAAACCATGTAAAATGATGTTGGGACAGTTGTATATCGGTGACACTTGAAACAATCAACAATGGTGTTACAGATCATGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10852 lncRNA downstream 34653 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 40112 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 111947 52090869 ~ 52091247 (-) True G8765
TU10833 lncRNA downstream 137744 52063404 ~ 52065450 (-) True G8759
TU10832 lncRNA downstream 143693 52058736 ~ 52059501 (-) True G8758
TU10916 lncRNA upstream 165559 52369239 ~ 52369463 (-) True G8829
TU10920 lncRNA upstream 350239 52553919 ~ 52554373 (-) True G8833
TU11032 lncRNA upstream 653026 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 654081 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 898221 53101901 ~ 53104836 (-) True G8981
AMCG00004505 mRNA downstream 248854 51942693 ~ 51954340 (-) False AMCG00004505
AMCG00004502 mRNA downstream 284295 51870043 ~ 51918899 (-) True AMCG00004502
AMCG00004503 mRNA downstream 334656 51856858 ~ 51868538 (-) True AMCG00004503
AMCG00004497 mRNA downstream 370855 51817211 ~ 51832339 (-) True AMCG00004497
AMCG00004493 mRNA downstream 675599 51520856 ~ 51527595 (-) True AMCG00004493
AMCG00004517 mRNA upstream 8950 52212630 ~ 52222193 (-) True AMCG00004517
AMCG00004519 mRNA upstream 23940 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004518 mRNA upstream 33534 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004521 mRNA upstream 51163 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004522 mRNA upstream 113951 52317631 ~ 52336606 (-) True AMCG00004522
TU10836 other downstream 131608 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 137312 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 248662 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1477841 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1529819 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 655362 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 655362 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 655362 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 695880 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 743132 52946812 ~ 52951387 (-) True G8937

Expression Profile