RNA id: TU10920


Basic Information

Item Value
RNA id TU10920
length 455
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G8833
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52553919 ~ 52554373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgtcttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgacatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacattactgcccttgttctcaattctacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10916 lncRNA downstream 184456 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 350239 52203194 ~ 52203680 (-) True G8795
TU10852 lncRNA downstream 385378 52168340 ~ 52168541 (-) True G8776
TU10845 lncRNA downstream 390837 52116880 ~ 52163082 (-) True G8769
TU10840 lncRNA downstream 462672 52090869 ~ 52091247 (-) True G8765
TU11032 lncRNA upstream 302333 52856706 ~ 52858452 (-) False AMCG00004529
TU11031 lncRNA upstream 303388 52857761 ~ 52859035 (-) False AMCG00004529
TU11107 lncRNA upstream 547528 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 593392 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 627578 53181951 ~ 53183364 (-) False AMCG00004551
AMCG00004523 mRNA downstream 154748 52353372 ~ 52399171 (-) True AMCG00004523
AMCG00004522 mRNA downstream 217313 52317631 ~ 52336606 (-) True AMCG00004522
AMCG00004521 mRNA downstream 257675 52254843 ~ 52296244 (-) True AMCG00004521
AMCG00004518 mRNA downstream 313054 52237214 ~ 52240865 (-) True AMCG00004518
AMCG00004519 mRNA downstream 321415 52227620 ~ 52232504 (-) True AMCG00004519
AMCG00004524 mRNA upstream 69033 52623406 ~ 52665227 (-) True AMCG00004524
AMCG00004525 mRNA upstream 172412 52726785 ~ 52733805 (-) True AMCG00004525
AMCG00004526 mRNA upstream 183765 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004528 mRNA upstream 255222 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004529 mRNA upstream 296110 52850483 ~ 52871113 (-) True AMCG00004529
TU10836 other downstream 482333 52068053 ~ 52071586 (-) True G8761
TU10834 other downstream 488037 52065526 ~ 52065882 (-) True G8760
TU10795 other downstream 599387 51953664 ~ 51954532 (-) True AMCG00004505
TU10541 other downstream 1828566 50723867 ~ 50725353 (-) True G8542
TU10487 other downstream 1880544 50671066 ~ 50673375 (-) True G8501
TU11033 other upstream 304669 52859042 ~ 52874108 (-) False AMCG00004529
TU11034 other upstream 304669 52859042 ~ 52860438 (-) False AMCG00004529
TU11035 other upstream 304669 52859042 ~ 52871546 (-) False AMCG00004529
TU11026 other upstream 345187 52899560 ~ 52911752 (-) False AMCG00004533
TU11054 other upstream 392439 52946812 ~ 52951387 (-) True G8937

Expression Profile