RNA id: TU11054


Basic Information

Item Value
RNA id TU11054
length 628
RNA type TUCP
GC content 0.43
exon number 6
gene id G8937
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52946812 ~ 52951387 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACTCAGTCAAGTGCAGAGAAGGGGTCTGCGCACAGAAGAGTGCTGTGTTGACTAGAGATAGAGGTTTATATGGCACAGAGATACAGCACAAAAAGtcaacaatgcaaatgcaagcaAGTACGATAAGTACAGTTATATAGGCTGGTTATGTTGCTGCAGCTTAACATTGCATTTTCCTCCTCAGGACAGCATTCCTCATACCTCACCATGGGAAAAATCACTCTCACTTTTGTGGTGCTGCTGGCATTTGGTCTGTCTTGGTTTCATGACACCACTGTCCACTgtATGAAAgctaaacaattaattaaaggcCAATCCCTTGATCCACACAATGCAAAACTCAAACCTTTTGACTGCAGAAATGGACATAACTTCAGATGTCAACTGGCACCTTGTGGAAAGGGTTATGTGCATGCACCATATGGCCTGTGTGAAAAGACAACACACATCTGTTGTTTGCCACCTAGAAAATTAGCTGGAAGTGAAGGCTCCTGAGCTTCTGCACATTTTCCTACAGAATGATTATTCCCTGTAGATCAGAACCTGTCCTAGTATTGACCCCTCTGCTTCAAGCGTAAGCTCTTAAACAACCAAATAAAGTGAACTGCAATGAGATGCATTGAGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 87777 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 88360 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 392439 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 577349 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 743132 52203194 ~ 52203680 (-) True G8795
TU11107 lncRNA upstream 150514 53101901 ~ 53104836 (-) True G8981
TU11129 lncRNA upstream 196378 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 230564 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 329664 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 542108 53493495 ~ 53493710 (-) True G9074
AMCG00004534 mRNA downstream 15131 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004533 mRNA downstream 35086 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004529 mRNA downstream 75699 52850483 ~ 52871113 (-) True AMCG00004529
AMCG00004528 mRNA downstream 125151 52809595 ~ 52821661 (-) True AMCG00004528
AMCG00004526 mRNA downstream 163450 52738138 ~ 52783362 (-) True AMCG00004526
AMCG00004532 mRNA upstream 12826 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004540 mRNA upstream 45725 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004539 mRNA upstream 55012 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004544 mRNA upstream 165673 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004553 mRNA upstream 200484 53151871 ~ 53162352 (-) True AMCG00004553
TU11026 other downstream 35060 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 72704 52859042 ~ 52874108 (-) False AMCG00004529
TU11035 other downstream 75266 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 86374 52859042 ~ 52860438 (-) False AMCG00004529
TU10836 other downstream 875226 52068053 ~ 52071586 (-) True G8761
TU11148 other upstream 233839 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 735029 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 735029 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 735029 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 1082077 54033464 ~ 54035522 (-) False AMCG00004575

Expression Profile