RNA id: TU11107


Basic Information

Item Value
RNA id TU11107
length 2339
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G8981
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53101901 ~ 53104836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTAATCCATGGTCAGAAATCAACGGGCTGTTCGGTATTGGGGCGGCAgattaaaaatttaaaacatcTGCCTCACGGTAGGCCTACTATTTATTCTATTTCACACACTCGGAAAGGCAGCGTGTGTTCGTTCAGGCGACTGTTCCTGTCCGTGCGATAAGCGCATCCCTAAAGAGCTTTGGGTCTCCCACTAACCAAGCCTCATAACTTATTAACACGTGTCAATAGTGTAAGTGTAtccgcctcctcctccatccCTTAATGGTTAAGAAAATATCAGGGGGGaaaaaccacaacacacacagactcaccaGCCACAGTGAGCTAGGCTGCAAATCAGGAAAGAAACACCAGGGAGAGACCGAGACGTTCAAATAAACCTCTTTTTAATTCTCAACAGCAAGTTAGCTTATGTGTGGTCAACATCAATGAaggtaaaatgttaaaagacTGGATCTGTCCAAAGAATGGCAACGGCAGGATTTGTGAAATGATACAAACAAACTGATAACACATTCACTATCCTTATTATcgtcagaataataataattatttataaatattgctATAATACTTCTGTACGGCATATACTGATTGACCAAAAAGCACTGTTAAGAAGCTAACTAAGAGAAGCAGCTCCCTGTTCTCCACATAGTGGGGTTTAACCAGGGTGCTTCACAAGGGACTTTGGTTTTGTACCTTTGTAAAAACGGGGTCTAATTATTTTTCCAGCAcggaaacaaaaaagaaaacaaaaatcatcaaaacaaaaaatatatttctttttctttctttctttaaattaaaagaaacaaaattaaaaggcaCAGCACtatcacactgaacacattttgtttctcgAAAGCAAGTTTTGTCTTTACAATTTCTAAAACCCTAATTTATACAAAGCGTAATGAACAACCATCAATGTTTAAAGTTCtcgtttcattttcaaaagtcTCTTTTCTTGGAAACCTGCTCACGTGTTCACGTTCACCAGCGGCTGTGCGCTCAGGAACCTGGAGGACTGAAATGGTTACCAAGCCGGCACTTCCTCTTCCTAGACCTTTCTCTGGATGTCACTTCCTTGAAATGGTATTGAAGTGAACCCTCAAGAGTTCACCGTGTCCTTCTGTCATgaataacatgttttgtttttttaaattaaacaaactgtttttcttcatccgtttttttatttattcttccaggaaagtagtgttttgttttaccaaGTAATTGTATGTTCAgtcaaagtttattttatgttgtagtTGTAAGAAAAATCCTCCTTTCTTCTTAAAAAGTTTGAAGTGTAAGAAAGCCCTGAACGGGCTGACCGTCTGAATCCAGTGTCATGTGACTTAGCGTTATGCTCCCCTGAAGGCTTCAGTTGACagaataatttttttcttccgttttttgtttttttgtccagaTCACGTTGAAACAGAACGTTCCTTTGAGAAACCTAGAAACTGGGTTAAGGCTTCCTTCAGTCCCGGAtgaaaatattgctttaatattgCCACAAAATCCACTGTCACAACACTTCTCAAGTGTGTttctacatatttaaaaacgattcattattgttattattatttctcagttCAGTTGATTTCCGGGTGAAATGTCATTCACAACCCGCCCATTGAATCGCAAGCAAAAAGTGTCGTCATTGTCTTTTCCTATGCGAGCAACACGAAACCTGTTGCCACTTGTGCTCTTAGTCCGAGCTGGAAACGAGTGCGTCCCCTCTGCTCGAGGTCAGCTCTGAAGCGGCTGTTTTCTTCTGGTGCGTGCCGTTCTCACTGCAAACAcgcgcacagagacacacacacacacatacacacattcgCACACAATCACACGCATGTTTCACAAGGGCGTGTGACTGGAACGTATTTATAGAAATTGTACACGGTCTCTGTCTCCAGCTGCTCACCACTCTCTCAGCTCTCTGGTGCTGGTTCGGGGCGGTGGGGTGGTGAGGGCGGCGGATGGCTGGGGGGCGGCCGGCTGGgactgttgttgttgctgtggtggctgctgttgctgctgctgctgggggacCCCTTGTGCTGGGGGGGCCCCCACAGAATCCTGGTGTCCCAGTGGCTGGCGTGGGGGGTAGGAGCCCTCAACGATGTGCATCTGGTTGAAGTAGGCCTGCAGCTGGGACTGCTTCTGGAGGTAGAGCCGCTTCTGGTGCAGCCTGATGgggtcgagagagagagatgcataaGACCTCAGTAGACAACATACTCCCATTGGTGCTTGTGGACACTCTTCATCTCAGAATCTACACCTTCACACTCTTCCAAGATCATCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11031 lncRNA downstream 242866 52857761 ~ 52859035 (-) False AMCG00004529
TU11032 lncRNA downstream 243449 52856706 ~ 52858452 (-) False AMCG00004529
TU10920 lncRNA downstream 547528 52553919 ~ 52554373 (-) True G8833
TU10916 lncRNA downstream 732438 52369239 ~ 52369463 (-) True G8829
TU10876 lncRNA downstream 898221 52203194 ~ 52203680 (-) True G8795
TU11129 lncRNA upstream 42929 53147765 ~ 53147974 (-) True G9002
TU11147 lncRNA upstream 77115 53181951 ~ 53183364 (-) False AMCG00004551
TU11190 lncRNA upstream 176215 53281051 ~ 53284971 (-) True G9048
TU11216 lncRNA upstream 388659 53493495 ~ 53493710 (-) True G9074
TU11312 lncRNA upstream 557548 53662384 ~ 53663246 (-) True G9141
AMCG00004539 mRNA downstream 93277 53006399 ~ 53008624 (-) True AMCG00004539
AMCG00004540 mRNA downstream 102089 52997112 ~ 52999812 (-) True AMCG00004540
AMCG00004532 mRNA downstream 134192 52964213 ~ 52967709 (-) True AMCG00004532
AMCG00004534 mRNA downstream 170220 52927361 ~ 52931681 (-) True AMCG00004534
AMCG00004533 mRNA downstream 190175 52898759 ~ 52911726 (-) True AMCG00004533
AMCG00004544 mRNA upstream 12224 53117060 ~ 53150892 (-) True AMCG00004544
AMCG00004553 mRNA upstream 47035 53151871 ~ 53162352 (-) True AMCG00004553
AMCG00004552 mRNA upstream 59837 53164673 ~ 53178444 (-) True AMCG00004552
AMCG00004551 mRNA upstream 74186 53179022 ~ 53189393 (-) True AMCG00004551
AMCG00004550 mRNA upstream 91434 53196270 ~ 53202552 (-) True AMCG00004550
TU11054 other downstream 150514 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 190149 52899560 ~ 52911752 (-) False AMCG00004533
TU11033 other downstream 227793 52859042 ~ 52874108 (-) False AMCG00004529
TU11035 other downstream 230355 52859042 ~ 52871546 (-) False AMCG00004529
TU11034 other downstream 241463 52859042 ~ 52860438 (-) False AMCG00004529
TU11148 other upstream 80390 53185226 ~ 53188021 (-) False AMCG00004551
TU11317 other upstream 581580 53686416 ~ 53689999 (-) False AMCG00004567
TU11319 other upstream 581580 53686416 ~ 53822222 (-) False AMCG00004567
TU11324 other upstream 581580 53686416 ~ 53856565 (-) False AMCG00004567
TU11409 other upstream 928628 54033464 ~ 54035522 (-) False AMCG00004575

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU325218 True 993 lncRNA 0.38 1 CI01000072 4269022 ~ 4270014 (-)
eurasian perch (Perca fluviatilis) TU28312 True 5052 lncRNA 0.50 2 NC_053113.1 31026054 ~ 31031162 (-)