RNA id: TU11329


Basic Information

Item Value
RNA id TU11329
length 355
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G9145
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53694204 ~ 53695507 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTGGAGAGGTAGTTGAAGACGGTGGCCCTCAGTTCAAACTGCTCCCCCCTGATGACGGAGTAGGGCAGGGTGAGCTCCACAAAGAAGGGCTGGAAAGCAGTGAGCAAGGTGGGGGGGGCCAGGCCCAGCCCTGTGGGGGCCAGGCAGAAGGCACTGGCCTCCCATGTGGTGATAGTGTCAGGGACAGTGACAGGAAGCTCTACTGACCCAGAAGCCCCTACTGGGACCAAATCCCAGATCCATGTCTCAGGGAAGAATGTTCGAATTGTCTCCATCGGTCCTCTCCCAGAGCTTCctgtcatcatcattatttcTGCTCTGTCTAAACTGTAGATATATCTATCAGACCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11312 lncRNA downstream 30958 53662384 ~ 53663246 (-) True G9141
TU11216 lncRNA downstream 200494 53493495 ~ 53493710 (-) True G9074
TU11190 lncRNA downstream 409233 53281051 ~ 53284971 (-) True G9048
TU11147 lncRNA downstream 510840 53181951 ~ 53183364 (-) False AMCG00004551
TU11129 lncRNA downstream 546230 53147765 ~ 53147974 (-) True G9002
TU11330 lncRNA upstream 1869 53697376 ~ 53700585 (-) True G9146
TU11333 lncRNA upstream 25735 53721242 ~ 53722122 (-) True G9149
TU11338 lncRNA upstream 98571 53794078 ~ 53829780 (-) False G9153
TU11339 lncRNA upstream 98571 53794078 ~ 53795344 (-) True G9153
TU11321 lncRNA upstream 101263 53796770 ~ 53863369 (-) False AMCG00004567
AMCG00004560 mRNA downstream 66322 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 82935 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 88788 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 107992 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 160367 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004567 mRNA upstream 101311 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004569 mRNA upstream 182768 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 214870 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 240237 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 268478 53963985 ~ 53965707 (-) True AMCG00004573
TU11317 other downstream 4205 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 506183 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 742817 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 782452 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 822658 52859042 ~ 52871546 (-) False AMCG00004529
TU11409 other upstream 337957 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 664591 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 881133 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 881133 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1672078 55367585 ~ 55420058 (-) True G9604

Expression Profile