RNA id: TU11338


Basic Information

Item Value
RNA id TU11338
length 333
lncRNA type sense_over
GC content 0.68
exon number 3
gene id G9153
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53794078 ~ 53829780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTCTGGTAGTAGTCGTAGACCTTGACCACAGCTGGTTTGAGGTTGTTCACTGGGTGCTTCTGGGTCATGGTGATGTGATAGTGATAGGTTTTTCCCCTTGTGAGCAGGCCGTGTCTGAATACACCTCTCCATGTCCTGACAATCGTGGACAAGACATCAATGTAGTGTAAAAGCAAAGCGTGGACTGCGGAAACCATTCAGTAACACACGCATGTATTTAGCTGTCAAATCAAATACCCAAAAGGCACCACAGACCTGCACAAGCCCAGTTCTTCTCTTCTTGTCATTTGTCAGATGGAAGATTCAGTGGTTACTtcttaataaaatgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11322 lncRNA downstream 19226 53686416 ~ 53774852 (-) False AMCG00004567
TU11333 lncRNA downstream 71956 53721242 ~ 53722122 (-) True G9149
TU11330 lncRNA downstream 93493 53697376 ~ 53700585 (-) True G9146
TU11329 lncRNA downstream 98571 53694204 ~ 53695507 (-) True G9145
TU11312 lncRNA downstream 130832 53662384 ~ 53663246 (-) True G9141
TU11347 lncRNA upstream 35171 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 256795 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 375773 54205553 ~ 54206013 (-) True G9261
TU11477 lncRNA upstream 428783 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 612601 54442381 ~ 54450341 (-) False AMCG00004598
AMCG00004560 mRNA downstream 166196 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 182809 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 188662 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 207866 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 260241 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004569 mRNA upstream 48495 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 80597 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 105964 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 134205 53963985 ~ 53965707 (-) True AMCG00004573
AMCG00004570 mRNA upstream 149965 53979745 ~ 53988395 (-) True AMCG00004570
TU11317 other downstream 104079 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 606057 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 842691 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 882326 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 922532 52859042 ~ 52871546 (-) False AMCG00004529
TU11409 other upstream 203684 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 530318 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 746860 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 746860 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1537805 55367585 ~ 55420058 (-) True G9604

Expression Profile