RNA id: TU11339


Basic Information

Item Value
RNA id TU11339
length 643
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G9153
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53794078 ~ 53829780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAAAGCCTTCTTATATTGGTATAAAAAAAACCTATTCACAGTGATGAACAATACAGTGCTGCTTGACCCTGACCACCACAGAACACAAGCACCTTGAGATTCtcagagagaaaaggaaattatttaatatagttttaaaatacatacattcaataGTTTGTATTCAAGCTGTGACAATGACAGAGGCCTGTACAGTAGAAAACGTGTGGCATTAGCCAATGAACAAACTGGATACATTGCAATACCTGGTACGGAAAAACACTATGATaccatatttgaaaataaaaacccaagTTTTCAATGTGTTGAACAGGATCTCTTTATAGCATGTTCCAGTACTGGAGGCTATGTACATTTCAGCTTATAGGTACCTGTCTGTCCCTCAATATGTGGTCCTTATGTCTTGTAGGTGAGCAGGCCGTGTCTGAATACACCTCTCCATGTCCTGACAATCGTGGACAAGACATCAATGTAGTGTAAAAGCAAAGCGTGGACTGCGGAAACCATTCAGTAACACACGCATGTATTTAGCTGTCAAATCAAATACCCAAAAGGCACCACAGACCTGCACAAGCCCAGTTCTTCTCTTCTTGTCATTTGTCAGATGGAAGATTCAGTGGTTACTtcttaataaaatgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11322 lncRNA downstream 19226 53686416 ~ 53774852 (-) False AMCG00004567
TU11333 lncRNA downstream 71956 53721242 ~ 53722122 (-) True G9149
TU11330 lncRNA downstream 93493 53697376 ~ 53700585 (-) True G9146
TU11329 lncRNA downstream 98571 53694204 ~ 53695507 (-) True G9145
TU11312 lncRNA downstream 130832 53662384 ~ 53663246 (-) True G9141
TU11321 lncRNA upstream 1426 53796770 ~ 53863369 (-) False AMCG00004567
TU11341 lncRNA upstream 27967 53823311 ~ 53824486 (-) False AMCG00004567
TU11347 lncRNA upstream 69607 53864951 ~ 53865675 (-) True G9161
TU11415 lncRNA upstream 291231 54086575 ~ 54087038 (-) True G9217
TU11462 lncRNA upstream 410209 54205553 ~ 54206013 (-) True G9261
AMCG00004560 mRNA downstream 166196 53618422 ~ 53627882 (-) True AMCG00004560
AMCG00004562 mRNA downstream 182809 53607807 ~ 53611269 (-) True AMCG00004562
AMCG00004561 mRNA downstream 188662 53587275 ~ 53605416 (-) True AMCG00004561
AMCG00004558 mRNA downstream 207866 53573530 ~ 53586212 (-) True AMCG00004558
AMCG00004559 mRNA downstream 260241 53526868 ~ 53533837 (-) True AMCG00004559
AMCG00004567 mRNA upstream 1474 53796818 ~ 53830893 (-) True AMCG00004567
AMCG00004569 mRNA upstream 82931 53878275 ~ 53905023 (-) True AMCG00004569
AMCG00004572 mRNA upstream 115033 53910377 ~ 53928613 (-) True AMCG00004572
AMCG00004571 mRNA upstream 140400 53935744 ~ 53949364 (-) True AMCG00004571
AMCG00004573 mRNA upstream 168641 53963985 ~ 53965707 (-) True AMCG00004573
TU11317 other downstream 104079 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 606057 53185226 ~ 53188021 (-) False AMCG00004551
TU11054 other downstream 842691 52946812 ~ 52951387 (-) True G8937
TU11026 other downstream 882326 52899560 ~ 52911752 (-) False AMCG00004533
TU11035 other downstream 922532 52859042 ~ 52871546 (-) False AMCG00004529
TU11409 other upstream 238120 54033464 ~ 54035522 (-) False AMCG00004575
TU11562 other upstream 564754 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 781296 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 781296 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1572241 55367585 ~ 55420058 (-) True G9604

Expression Profile