RNA id: TU1140


Basic Information

Item Value
RNA id TU1140
length 287
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G960
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5829459 ~ 5829745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaaggtgaggaagagtgggggaaaaagaggagatctgatttggagaggttgagcttgaggtggtgcgagtgcatccaggcggaaatggcagacaagcaggaagagatgcgtgaggggatgagagggtcagaagagggaaaagacaggaagatctgggcatcatcagcgtagaagtggtaggagaaaccatgggaagcgatgagggggcccagggagcaagtgtagagagagaacaggagcgggcccaggacggagccttgtggaacacctgtgaggagaggttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1088 lncRNA upstream 270944 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 273153 5550745 ~ 5556306 (+) True G907
TU992 lncRNA upstream 494707 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 1275814 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 1308826 4515348 ~ 4520633 (+) True AMCG00003469
TU1170 lncRNA downstream 125859 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 156293 5986038 ~ 5986394 (+) True G990
TU1358 lncRNA downstream 1243659 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 1535199 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 1659700 7489445 ~ 7489881 (+) True G1218
AMCG00003497 mRNA upstream 3727 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003498 mRNA upstream 59522 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003495 mRNA upstream 76198 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003487 mRNA upstream 322552 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003485 mRNA upstream 426919 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003496 mRNA downstream 84726 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003500 mRNA downstream 437156 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003499 mRNA downstream 545514 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003501 mRNA downstream 791066 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003505 mRNA downstream 893785 6723530 ~ 6736370 (+) True AMCG00003505
TU1202 other downstream 657947 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 2819380 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3426083 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 3947763 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5660440 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile