RNA id: TU11462


Basic Information

Item Value
RNA id TU11462
length 461
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G9261
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54205553 ~ 54206013 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTATCTGGGCCGAGCGGGAGCCTCTGTCCCGGCAGGGGGCCCCTCTCTGTCTGCAGCCCGGGCCGTTGGACCCTTTGTGGCGGAAGAGAgttttggagtcgggagttTTAATCGGAATTTATTACGTGTGCGAATTTAGCTGCATCTCTCTCACAACTCACCCCTCTCACTCTCCgcatctgtctctgtctcacgCTGTGCCGGAGCCTCGTCTCTCCCTGTCGCTTACTTTGCCACTTCTTTCAGCGAactaatgatttaaatattgtttattggaCACATAATCCAGGGGGAATGGGGATCTCTCCTTCTTGCGTGTTGGTGTGGCGTGGCCATCGCTGGAGCTGCCCTTCACCTCAACCCCCTCTATAACGGCGCTGAAGGCTGTTCTCAGAGCGGCGCCCTAAGGCTGCTCTGTCTCTTTCCGGGAGAAGATGGAGCaatgtcactttttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11415 lncRNA downstream 118515 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 339878 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 342184 53796770 ~ 53863369 (-) False AMCG00004567
TU11338 lncRNA downstream 375773 53794078 ~ 53829780 (-) False G9153
TU11477 lncRNA upstream 52550 54258563 ~ 54273287 (-) True G9273
TU11586 lncRNA upstream 236368 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 443038 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 471651 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 487333 54693346 ~ 54789735 (-) True G9445
AMCG00004581 mRNA downstream 558 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004579 mRNA downstream 83066 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004575 mRNA downstream 162125 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004574 mRNA downstream 201003 53992451 ~ 54004550 (-) True AMCG00004574
AMCG00004570 mRNA downstream 217158 53979745 ~ 53988395 (-) True AMCG00004570
AMCG00004582 mRNA upstream 67 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004583 mRNA upstream 17790 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004589 mRNA upstream 125235 54331248 ~ 54342566 (-) True AMCG00004589
AMCG00004591 mRNA upstream 148994 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004590 mRNA upstream 150447 54356460 ~ 54373627 (-) True AMCG00004590
TU11409 other downstream 170031 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 348988 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 383331 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 515554 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 1017532 53185226 ~ 53188021 (-) False AMCG00004551
TU11562 other upstream 154085 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 370627 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 370627 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1161572 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1176203 55382216 ~ 55388939 (-) False G9608

Expression Profile