RNA id: TU11477


Basic Information

Item Value
RNA id TU11477
length 2267
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G9273
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54258563 ~ 54273287 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACACACTCGTACACACAGGTGTTACAGCAcgacacaaactcacacacgcGTTACAGCacgacacacactcacagacacaccctCGTACACACACAGGCGTTACAGCACGACACACTCGTACACACAGGCATTACAGCATAacgcactctcacacacacagcgctcACCGATCTCGTCCTGCATCTCCTCAGTGACGTAGGGCACCTTGTACAGCAGAGACAGGCTCTGGTTCATCCGCTCCTCGATCACACGCAAGTGGGTCATCACCTGCAACGTCCGAGACACGGGCACAGACAAGCACACggtcaagagagagagacaggcacaCGGTCAGAGTGACAGATGGGCACACAGACGGGCACgcggtcagagagagagagagacacagggagagagacacacaagcCCACAGACAGGTAAACATACAGACAGgtagacacagagagagacgatCGGACACACGTTGTGTCTCACATTCCTACGGTTTCTCTGTCTGAGtgtcagacagagagacagacgggcagacagacagcaggTTTTCAAAGAAGGCGAATGACCGAAATCCGGCTCTTCTGTGCGGCAGCCCAGTGACGCCACACACCCCCCTGCTCCGAGCTGCAGTACCCAGCCGCCCACACCAGGGGGAGACCAACGCCAGGCAATGAGGGCCCATAACTCAGCGCAGTCCCGTCTCATCactcctcccacccccccaccctctccctgGCTTTGTTTCCGCCACATAATAGAGAGAGCGAGGCGCGatgaagaggggaaaaaaataaaaaatcagcaCAGACAAtggaggggagaaaaacaacaataaaacaaagccaCAGGATGCAGGCTGGGAGAGCGCGCCAGGCTAAAGAAAGGGCCCAGAACCGCGGCGTCCAGCTGCACGGCACAGCGCCACCGAAACCACCGGCACGGCAGGACAGACAGCTGCTCACACGGCATTTGATAGGGGTTAGAAAACAGGCCCATCCTTAGCCTTAAAGACAACAACAGTCTATTGAATGATCGAGGCAAAAATggtgccccctcccccccgccaGTGCAGAACTCTGTTTCCTGATGTGTGCAGTTCCTCCCGGAGGTGTTCTATATTTAAGATTGAGGTCAGGGCCAAGAAATGTTTTAGGATGCGCCGCGCCGGATGAGCGGATCGGCGCATAATGGGGTCATTTGAGCAATGAGGTAATGGAGTTGTATTCCTGCGTGTTATCTCTCGCCCCTGAATGATCAACCAGTGCTACAGTCGAGGTAAACAAAGggtttattataaaaacaacacaatacaacatgCAGTGAGGGAGCAAGCCATCAAAAATGATTGAGACACTTCCTTTCAGACATGAAGGGAGCGAGACGGCTTAATGATTAGAAAAGAAATTCCCCGAAAGAGCTAATCAACTGAGAACCCGAACCACCAAAGAGGAATAATCACACTCAGCCACAGAGCTCGTGAGGTTTAGTTTAAAGCGACTCGTTCACGTGGTCTGGCTGCCTGCCGCTCTCGCCGCGCCTCGGCTCCCGACTCGGGCCCCTACAGGTGAAAGCGAAAGTCTTTTTAAAGCGGGCACATCTCGGCCACCTCTCCCAACTCCTGCTCACGGAGACAGACCCTCGACGGAGGGAGGGAAGAAGGTGCCGATTGGCCGAGCGACCAGTAGGATCTGAAGGAGTCTCTCGTGGTGTGAACACGGCCGGCCCGGGGGGCTCCAACTCATATCTTCTCTCCCTCGAAGTACGGATCTTCTTCATTTGAGAAACACACACtagtgagtctctctctctctctctctctctctctctctctctctctctggggaaACAGCGTTGATTCGCTGTACGGGAGAGCGCTATGAGGGGCGTTCCTGCACAGTGCCGGATGCCCTTCAAAACGCCAACCTCGACACAGCACAGTCCCCGGGCCGCAGCCGGAGAAGGAGACCGGGGTGATTTTGTGCGATTGACTTTTTGGACACATCACGGACTACACTGTGAACAGCCGCCGCCGCCACCGCCACCTCTCCTCTTGTTCCCACTGACCTGGGACTTCATCTGAGCCGCCTTCTCGGGGTCGACGGCCAGGACGTGCTGGTAGTGCCGGATGGTGTGCTGGCGATCCTTGTTCTCGGCACGGACGTAACGCCTCAGGGCCTGCAGGATACGGTGACGCTGAGGGAtgaagagagatagagagagagagagagggggggagagagagagagagagagagagagagagaggcacagaggG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11462 lncRNA downstream 52550 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 171525 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 392888 53864951 ~ 53865675 (-) True G9161
TU11321 lncRNA downstream 395194 53796770 ~ 53863369 (-) False AMCG00004567
TU11341 lncRNA downstream 434077 53823311 ~ 53824486 (-) False AMCG00004567
TU11586 lncRNA upstream 169094 54442381 ~ 54450341 (-) False AMCG00004598
TU11684 lncRNA upstream 375764 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 404377 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 420059 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 513107 54786394 ~ 54788637 (-) True G9461
AMCG00004583 mRNA downstream 32510 54223803 ~ 54226053 (-) True AMCG00004583
AMCG00004582 mRNA downstream 38695 54206080 ~ 54219868 (-) True AMCG00004582
AMCG00004581 mRNA downstream 53568 54195348 ~ 54204995 (-) True AMCG00004581
AMCG00004579 mRNA downstream 136076 54105061 ~ 54122487 (-) True AMCG00004579
AMCG00004575 mRNA downstream 215135 54032634 ~ 54043428 (-) True AMCG00004575
AMCG00004589 mRNA upstream 57961 54331248 ~ 54342566 (-) True AMCG00004589
AMCG00004591 mRNA upstream 81720 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004590 mRNA upstream 83173 54356460 ~ 54373627 (-) True AMCG00004590
AMCG00004592 mRNA upstream 100412 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004599 mRNA upstream 121188 54394475 ~ 54398918 (-) True AMCG00004599
TU11409 other downstream 223041 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 401998 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 436341 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 568564 53686416 ~ 53689999 (-) False AMCG00004567
TU11148 other downstream 1070542 53185226 ~ 53188021 (-) False AMCG00004551
TU11562 other upstream 86811 54360098 ~ 54364267 (-) False AMCG00004590
TU11664 other upstream 303353 54576640 ~ 54583230 (-) True G9414
TU11665 other upstream 303353 54576640 ~ 54620055 (-) False G9414
TU11901 other upstream 1094298 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 1108929 55382216 ~ 55388939 (-) False G9608

Expression Profile