RNA id: TU11664


Basic Information

Item Value
RNA id TU11664
length 691
RNA type TUCP
GC content 0.51
exon number 4
gene id G9414
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54576640 ~ 54620055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCGGCAGGATCAGACAGAAGGGCGGATCTAAACGAGCAGTCAAACTACCTGTGTAGACTGAACTCAATCCACTGTTTTGCCTGGAGAAGGAGACTGAGGCACACAAACTGAAAGTGTAGAGTGTAGAGATCAGAATCTGATTAACCATTTTTGTCTGAACTGTCGGGAAGAAACACTGGTAGTTTTCTACCTTCAGCGGCTCTGGATAAGggagggtgtctgccaagaacgAAAAATATTACCAGGAAGGTTTAGTGGGCAATTTGGCCCCTTTCTTGCCTGTGATCTCCACACTCCACGTACTTGAGCCGGGAGCTGGGGACATCAACTGATCGATCATGCCGACGGACACTGAAGCAGCTTTGGAGTCGTCCAGCCCCCTTAATCCCTCAAGCAAAGGCAAACCCAGGAAGAAAATGCCAGCCACGACCAAACGACCGTTGAAGGAGCGATGCTCCGTGCAGTGGATGGTCATCACAGTGCTGATCGTGCTCACTCTGCTGGGGCTGCTGATCACTGGGGCATACTTCCTGAAGATTCTGATCGACACCAACTTCTTCTTCTGCAAGACATCCTTTAAGTTTATCCCCCGCTCCAAGGTGTGTGACGGGAAGGCGGACTGTGCGAATAGGGAGGACGAGCTGATGTGTGTGACCAACCTGACGATCAACTCCTCCTTCCCAGGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11586 lncRNA downstream 126299 54442381 ~ 54450341 (-) False AMCG00004598
TU11477 lncRNA downstream 303353 54258563 ~ 54273287 (-) True G9273
TU11462 lncRNA downstream 370627 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 489602 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 710965 53864951 ~ 53865675 (-) True G9161
TU11684 lncRNA upstream 65821 54649051 ~ 54676988 (-) True G9427
TU11688 lncRNA upstream 94434 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 110116 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 203164 54786394 ~ 54788637 (-) True G9461
TU11738 lncRNA upstream 332387 54915617 ~ 54918457 (-) False AMCG00004618
AMCG00004598 mRNA downstream 126538 54441771 ~ 54450102 (-) True AMCG00004598
AMCG00004599 mRNA downstream 177722 54394475 ~ 54398918 (-) True AMCG00004599
AMCG00004592 mRNA downstream 202693 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004590 mRNA downstream 203013 54356460 ~ 54373627 (-) True AMCG00004590
AMCG00004591 mRNA downstream 220191 54355007 ~ 54356449 (-) True AMCG00004591
AMCG00004605 mRNA upstream 18229 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004607 mRNA upstream 116586 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004618 mRNA upstream 332354 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004622 mRNA upstream 394617 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004621 mRNA upstream 426474 55009704 ~ 55018100 (-) True AMCG00004621
TU11562 other downstream 212373 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 541118 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 720075 53686416 ~ 53856565 (-) False AMCG00004567
TU11319 other downstream 754418 53686416 ~ 53822222 (-) False AMCG00004567
TU11317 other downstream 886641 53686416 ~ 53689999 (-) False AMCG00004567
TU11901 other upstream 784355 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 798986 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 946433 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 946433 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 1238919 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile