RNA id: TU11684



Basic Information


Item Value
RNA id TU11684
length 1106
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G9427
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54649051 ~ 54676988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttgttttatgttttattacacaactatatttgtatatatgtgtgtgtgtgaacattgagtttgctaagaaaactcaaaattatttatataaatcctCCAATGTTATCCTTTGTTCATACTGATCACATATGAAAGTAATAtccagatatgtgcctaaataacatttatttttgttggacatggttttcttcaagataaaattgaggaaccgtaaaaataccttgataatttatggaaaataaaatgttggattaaaacatcaaattaatcgCTTGTGTGCCCCCTATATAAGGCTCACATACAAACATAtccacattcactttattactaaaatcacaatttacttttacttttggtaattGAGTACTCttaaaagtagctactttttttCACTTgtactcaagtactgtttgaatgggagactttttaagtttttgatagaatatttttacttttactcaagtatgacttcaGAAAACGTTTTACACCTCTGATGCCCGGTGCTGCCACTTTGCGTGTGATTTTGGACAGAAAGCACTTTGGCCAGCTGGCAGCTCCTTGATCTGGGACAGAGGCTTGGCCCGCCACGCTGGAAATACAGCACGGACCACCATCGCAATATGGCACTGACTCGCAGAACTGAGAGTGATCACAATTTTAATGCAACTACTTCAATGATTAATCTGAGACTCTTCCCCTAAACGTGCAAAAGATGAGCCAAAACAAAAGTACTCGAGGCTAAGAAAAGCACAGAGGATCTAAGAATATTCTGATTGCGAAAGTAACACATATACATTTAGAAGGATAAACATCTATTTACAGGGTTTACTCAAGATACTGaacttataacacttgcaattTTTGAAACAATAAACGCTACATTACACAATGAACTCGACAGTGACACCATGTGATGGCTACTGGTAATTTTCCAGCTCAACACATCTATATAGATCTATAACATCCATCTGTCCCTGTTTAGTAATAATCTTAGGGAGGTCCTGCTACATACAAGGTTAATGACatttaggatttgtttttatggaagcgtattgctgccacacgtAAAAAAAAAAANatatatatatatatatatatatacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU11586 lncRNA downstream 198710 54442381 ~ 54450341 (-) False AMCG00004598
TU11477 lncRNA downstream 375764 54258563 ~ 54273287 (-) True G9273
TU11462 lncRNA downstream 443038 54205553 ~ 54206013 (-) True G9261
TU11415 lncRNA downstream 562013 54086575 ~ 54087038 (-) True G9217
TU11347 lncRNA downstream 783376 53864951 ~ 53865675 (-) True G9161
TU11688 lncRNA upstream 676 54677664 ~ 54677917 (-) True G9431
TU11705 lncRNA upstream 16358 54693346 ~ 54789735 (-) True G9445
TU11723 lncRNA upstream 109406 54786394 ~ 54788637 (-) True G9461
TU11738 lncRNA upstream 238629 54915617 ~ 54918457 (-) False AMCG00004618
TU11770 lncRNA upstream 246541 54923529 ~ 54973886 (-) False G9502
AMCG00004605 mRNA downstream 42224 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004598 mRNA downstream 198949 54441771 ~ 54450102 (-) True AMCG00004598
AMCG00004599 mRNA downstream 250133 54394475 ~ 54398918 (-) True AMCG00004599
AMCG00004592 mRNA downstream 275104 54373699 ~ 54373947 (-) True AMCG00004592
AMCG00004590 mRNA downstream 275424 54356460 ~ 54373627 (-) True AMCG00004590
AMCG00004607 mRNA upstream 22828 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004618 mRNA upstream 238596 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004622 mRNA upstream 300859 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004621 mRNA upstream 332716 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004620 mRNA upstream 353272 55030260 ~ 55035952 (-) True AMCG00004620
TU11665 other downstream 28996 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 65821 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 284784 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 613529 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 792486 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 690597 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 705228 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 852675 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 852675 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 1145161 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile