RNA id: TU1169



Basic Information


Item Value
RNA id TU1169
length 216
lncRNA type intronic
GC content 0.39
exon number 1
gene id G982
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5955104 ~ 5955319 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCGGGAAGAGCTCTAAACAACTTCTCTCTCAGTCCTGTAAATGGAAAGCTGACGCACATATTGAAATCAGTATGCCAGAGTTTGTGCAACACTAAACCAATAACCAGTACCATGTTGCTCACTGGTACTAAGTGATCCAGTACTATGAATTAAatacttcaaaacaaacaagcttcAACATGGCACTGGAGACACAGCAGCTTAATATGGATAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1141 lncRNA downstream 125355 5829447 ~ 5829749 (-) True G961
TU1126 lncRNA downstream 166783 5788068 ~ 5788321 (-) True G946
TU1122 lncRNA downstream 199636 5752077 ~ 5755468 (-) True G942
TU1029 lncRNA downstream 613117 5340461 ~ 5341987 (-) True G862
TU1009 lncRNA downstream 620346 5330726 ~ 5334758 (-) True G845
TU1180 lncRNA upstream 31246 5986565 ~ 5986975 (-) True G993
TU1185 lncRNA upstream 332009 6287328 ~ 6287540 (-) True G998
TU1319 lncRNA upstream 863338 6818657 ~ 6825716 (-) True G1114
TU1323 lncRNA upstream 886450 6841769 ~ 6851759 (-) True G1117
TU1359 lncRNA upstream 1118082 7073401 ~ 7073614 (-) True G1147
AMCG00003490 mRNA downstream 103923 5846898 ~ 5851181 (-) True AMCG00003490
AMCG00003489 mRNA downstream 221667 5633462 ~ 5733437 (-) True AMCG00003489
AMCG00003488 mRNA downstream 399362 5553481 ~ 5555742 (-) True AMCG00003488
AMCG00003486 mRNA downstream 541443 5408798 ~ 5413661 (-) True AMCG00003486
AMCG00003483 mRNA downstream 581686 5361087 ~ 5373418 (-) True AMCG00003483
AMCG00003492 mRNA upstream 19626 5974945 ~ 5977627 (-) True AMCG00003492
AMCG00003493 mRNA upstream 32765 5988084 ~ 5997463 (-) True AMCG00003493
AMCG00003494 mRNA upstream 187753 6143072 ~ 6144359 (-) True AMCG00003494
AMCG00003502 mRNA upstream 692133 6647452 ~ 6656335 (-) True AMCG00003502
AMCG00003504 mRNA upstream 741636 6696955 ~ 6700531 (-) True AMCG00003504
TU1027 other downstream 598636 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 1293737 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 2524832 3394657 ~ 3430272 (-) True G531
TU462 other downstream 3516283 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 3553209 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 4995857 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 5148007 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 5968489 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 6120719 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 7079634 13034953 ~ 13035489 (-) True G2236

Expression Profile