RNA id: TU11776


Basic Information

Item Value
RNA id TU11776
length 1037
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G9504
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55007762 ~ 55008798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGTCTCTCCAGGGTTCATATACTTGCACTATGTTACCAAAGGCAATgggaccacacacacacacacaccggccCAGTTGCCACATTCATGGCTGCCGTGCCGCAATCCTTTAGAAAGACAGCTGGAGGAATGCTGTGCCATTCGTCCTTGCAGTGCAGCTTCTAGGCGCTGCTGACTTTCAGTCCCAGttcctcccagaggtgttctaactctgggatttgtgtgtgtaatagtactgtattgtaaatatatatatacacacatgcagttACTGTCAGAACTGTACACCCCCTTCTTTTGAAACAAGTGTTATTCTCTGATTAATGTTGTatgataaacattttatttacgcCTCTTTGTTTCCTCTGGGCTCGGGCTGATGGGTGTTTCCACTCTCTGATCTGCACGCCATTGGTGGGCAGTTGCCACTCCAGGTGCCAGGGACCCAAtatcctgctggtttctgttctcTAAattctttaattgaactaataattgggATAAACTGAGCTCATTCAGAATTATAAACCACTGGAGACTTCgggttaaatataaaagtaaataaggCACCACAACTTTTTGtactttaaaacattataacattaAGTAAAGCAAAGTGTTAGTTCAGTTTGGGTTTCAGTGAATGCATTGAGGATGCAGCTGGCACAGAAACCCACAGCACACTGGGTCCCCCGGGTCAGCATTGGGAAACACTGGTTAAAGGGAAGGTCTTTATTCTGGTTCAATAATGACAGGATAACGTGGCTGTCAGTGAGGCGTCTGAGCACTTCTCACTGCAGCGGCACAGGCATGGAGATACACAGCAGCCCTGTCAACTCAGACTCCGCTCTGCAcgcccacacacccacacccgcacccactctctctctctctcccttaaacaaagtgcaataaatatCACACTAcagccaccccccccctccagcCCCTGACAGGTTGTCAATGTGTGTAGTGTTGTTGACTGTAGAGATTTTACTGTATAAACAAAACGTACATGGGCAAGAAAGACATGTA

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11787 lncRNA downstream 3959 55001583 ~ 55003803 (-) False G9512
TU11799 lncRNA downstream 3959 55001583 ~ 55003803 (-) True G9512
TU11771 lncRNA downstream 32765 54923529 ~ 54974997 (-) False G9502
TU11772 lncRNA downstream 32765 54964740 ~ 54974997 (-) False G9502
TU11773 lncRNA downstream 32765 54964740 ~ 54974997 (-) True G9502
TU11804 lncRNA upstream 11099 55019897 ~ 55020096 (-) True G9517
TU11810 lncRNA upstream 65248 55074046 ~ 55074375 (-) True G9523
TU11821 lncRNA upstream 105544 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA upstream 105544 55114342 ~ 55114911 (-) False G9533
TU11867 lncRNA upstream 254127 55262925 ~ 55263287 (-) True G9570
AMCG00004622 mRNA downstream 9334 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 87824 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004607 mRNA downstream 299751 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004605 mRNA downstream 400935 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004598 mRNA downstream 557660 54441771 ~ 54450102 (-) True AMCG00004598
AMCG00004621 mRNA upstream 906 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004620 mRNA upstream 21462 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004625 mRNA upstream 107839 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004627 mRNA upstream 132107 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004628 mRNA upstream 196287 55205085 ~ 55219718 (-) True AMCG00004628
TU11665 other downstream 387707 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 424532 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 643495 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 972240 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1151197 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 358787 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 373418 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 520865 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 520865 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 813351 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile