RNA id: TU11787


Basic Information

Item Value
RNA id TU11787
length 1993
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G9512
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55001583 ~ 55003803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTCtggctctctccctccttcacGCGCCGTTCCAGGCTGCAGACCTGGCTGTTGTTCTGCAGCTCGAGCAGCTCCTGCTGTCTGGTCACAGTGTCGCACTGCTGCAGAAGCTCCGCGGCGCGCTGCTCCACCTCCTGCTGCACacgcacagcacacacacaattagtgtatgcacagtactgtatagtaAGATAGTGACATTATGAGAAACAGGATGAGACACAATAACTTAGAACGACAATTACCATCACGGCCTCGCAGTCCTGCTCCGTGTTCACTGCCCGCTCCTCTCTCCAGAGCTCTGTCTGCACCAAGACACACCGTCAGAAAGCAGTACACACACCAGCCTATCTGACCTGtacacctctccctctctcacctgtGTCGCCTGCTCCACCCATGCGTCCATCTCTGAGTCCAGTGTGGGGGAGGGCTCATTGTACAGCTCCCCTGCGCCGACGCACACAGGTGGACCTCCCAGCAGCACCGGGGGATAACCAACATCAGCAGCCTGGGGATTGGTCAAGGGGTCTGTGGTCCAGATGTACGACTGGTCTGTCACCACGGGCCGGCTCAATGGAAGTGGGAGAGAGTGGCGGGAGTGTTTAGGCGTTCCCAGTGTGAGGGGGACGCAGTGCTTTACTTACTCAATGCTAAGTCAATCAGGCTTTAATCTGGACTGTACATAacatgactgactgactgactgacaaatAAGTTGACCGACAGACCTTAAGTCTGATTAGTTTTGGTCCACAGGGCAACACTGTGTGCGAGTGCGTTACAGCGCGAGTCTGGGGGATGGTGTTCAGACAGTCACAAGCACTGTGCAGATTATATGAGTGCAGGAATTGAGGCAATGTGCACAGCATGTGAGTGTTCAGTAACTTAAGTGTGTGTGAATAAAGTGTGTAAcaagccagtcagtcagtgtgtgatgTAGGTAGTgctcagtcagtcagggtgtgGTGTAGGTAGTgctcagtcagtcagggtgtgGTGCAGGTAGTgctcagtcagtcagggtgtgGTGCAggtagtgttcagtcagtcagggtgtgTGGTTAGTATGAGAGAGGTACCTGGCCTCCCGGTGTGAGAGCTTCTCCAACATGGCGTCCCAGTCGCACTCGCCCTCCAGGCTCATCTCTGCCACCTGAACACAGACGCGGCTGGTCAGCGGCTCCGGAGACGGTGGACGCCTTTCGCCGCTGTGGCTCTAGGGCCGACTGACGTCAGCACGCACGCTGGACGTCAGCGCGGTTTGAGACGAGCCGGGCTGTTTACCCGCTGGTGCGCAGACTGACCAGCGCAGAGACGCTGCGTGCGGACGCTCAAGAGCAGCGCTAACCCGGCGGGAGGCGAACTGCGACAGCTGAGCGTATTCTGGCAAAGACTCGTTTTAGCCCGAGCAAAGCGCAAGTCCCTTCACTGGAGGCGAGGCGGTCTGATCCCGCCGGTCGTGTAATATGAACACAAGCACCCACTGCACACAGCAACACACGCCTTCGGACCGCGGCGCGCTTCCGGGTTCAGAGGTCACGTTTTGGCGTTatccgcagctctgcgcggctccaccaatgggatcccTGGGaatctgcagttctgcgcaaaactgcggacatctgcgccacAAGGAAACGCCCAGAGAGAAGACGAGAGAGGCCGAGGGTCCCGCAGCGACGGAGGCGCCTCTGTTTGCCAGAGCGTCCCCTTGTGGCAGATGCTGCTTCCCGCACGTTTTCTGAAACGCAGGCGAGAGCAGTGCAGTCAGGATTTGAGAGcagaaatattgaaaaacaatattccCATATGCGGCGGAGCAGCTTTTGCTTTAACTCCATGTCTCATCTCAAACACTATTACAACacacttttttaacatttatagttatatatatatNNNNNNNNNNatatatatatataaatatgtgtctGATTCCCTTTTCACGCAACTGCATTAAAAACGTACAAGCAGTGCAATATGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11771 lncRNA downstream 26586 54923529 ~ 54974997 (-) False G9502
TU11772 lncRNA downstream 26586 54964740 ~ 54974997 (-) False G9502
TU11773 lncRNA downstream 26586 54964740 ~ 54974997 (-) True G9502
TU11770 lncRNA downstream 27697 54923529 ~ 54973886 (-) False G9502
TU11738 lncRNA downstream 83126 54915617 ~ 54918457 (-) False AMCG00004618
TU11776 lncRNA upstream 3959 55007762 ~ 55008798 (-) True G9504
TU11804 lncRNA upstream 16094 55019897 ~ 55020096 (-) True G9517
TU11810 lncRNA upstream 70243 55074046 ~ 55074375 (-) True G9523
TU11821 lncRNA upstream 110539 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA upstream 110539 55114342 ~ 55114911 (-) False G9533
AMCG00004622 mRNA downstream 3155 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 81645 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004607 mRNA downstream 293572 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004605 mRNA downstream 394756 54601459 ~ 54606827 (-) True AMCG00004605
AMCG00004598 mRNA downstream 551481 54441771 ~ 54450102 (-) True AMCG00004598
AMCG00004621 mRNA upstream 5901 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004620 mRNA upstream 26457 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004625 mRNA upstream 112834 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004627 mRNA upstream 137102 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004628 mRNA upstream 201282 55205085 ~ 55219718 (-) True AMCG00004628
TU11665 other downstream 381528 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 418353 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 637316 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 966061 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1145018 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 363782 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 378413 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 525860 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 525860 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 818346 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile