RNA id: TU11822


Basic Information

Item Value
RNA id TU11822
length 570
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G9533
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55114342 ~ 55116494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGGGTTTAGCTGTGGAGAATGAGAACAGGGAGCTGAGCATGTGTGCTTGTGCTTTAAAGctttttggttgtattttttttttcgttaCCGATCGGTACCGATTTCTCAATAGCGCTACAGGAAACCCTGGGAGGAGCTCAACAAAGGAGTGGGCACAAGAAACAGCCCGACTACAAGCCTGGATCAATGTAACAGGATGATAAAATGCATTGGTAGCATTAGGGATGTGATTGCATGCACAGCTGTGATTTTTGGTCGTAATTTAGGGTAAAAAACGTTTGTTGTAAAATGCCAGTAGAACTCATCCTCAGTTGAATTACGagtttaaattgtttataaatgttCACACAATCATGGGATTCATCGTTCCAGAGCTCTGTTTCAGGACAGACTCCCCATTATTGTGTCTGCTAGTGTATGGCATCGTCAAGCTCATTATGCAGTCGTCTGATGTCCTAACGGTACAGAATGTTGTGTTGATTGCAAAGTCCTGTTTGggaatttcacatttatatatcgtataatttatacattcaataaaataattttaagaaaTTGATCAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11810 lncRNA downstream 39967 55074046 ~ 55074375 (-) True G9523
TU11804 lncRNA downstream 94246 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 105544 55007762 ~ 55008798 (-) True G9504
TU11787 lncRNA downstream 110539 55001583 ~ 55003803 (-) False G9512
TU11867 lncRNA upstream 148014 55262925 ~ 55263287 (-) True G9570
TU11890 lncRNA upstream 231872 55346783 ~ 55357633 (-) True G9593
TU11907 lncRNA upstream 271738 55386649 ~ 55388939 (-) True G9608
TU11952 lncRNA upstream 438913 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 463365 55578276 ~ 55584995 (-) True G9656
AMCG00004620 mRNA downstream 78390 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004621 mRNA downstream 96242 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004622 mRNA downstream 115914 54977847 ~ 54998428 (-) True AMCG00004622
AMCG00004618 mRNA downstream 194404 54915584 ~ 54919938 (-) True AMCG00004618
AMCG00004607 mRNA downstream 406331 54699816 ~ 54708011 (-) True AMCG00004607
AMCG00004625 mRNA upstream 1726 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004627 mRNA upstream 25994 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004628 mRNA upstream 90174 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004633 mRNA upstream 109924 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004630 mRNA upstream 157432 55272343 ~ 55293024 (-) True AMCG00004630
TU11665 other downstream 494287 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 531112 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 750075 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1078820 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1257777 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 252674 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 267305 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 414752 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 414752 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 707238 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile