RNA id: TU11867


Basic Information

Item Value
RNA id TU11867
length 363
lncRNA type intronic
GC content 0.44
exon number 1
gene id G9570
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55262925 ~ 55263287 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagaaacttgacccttggaaaacgaacagggccctgctttcctcaaagactttgtcttcaagtaactatggtggaaaaccctgcttacaaagaagacatcctgtgcacaaccttggagccttcaaaccagtggaaaatctgtttggaaaagactctacttttgcgaaaccccaacttccaggtgcatcgactgaagtggaagttattggacaaagccgaaccagactgcctttgttccaaaccacacagacctcgtgccatgtttttatctgatcccgaagacagagaggcctctctgcgatgaAGTTCAGATAaatttaacagtttggagtatgttattcatgacatttgagaaatcaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11821 lncRNA downstream 146431 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 148014 55114342 ~ 55114911 (-) False G9533
TU11810 lncRNA downstream 188550 55074046 ~ 55074375 (-) True G9523
TU11804 lncRNA downstream 242829 55019897 ~ 55020096 (-) True G9517
TU11776 lncRNA downstream 254127 55007762 ~ 55008798 (-) True G9504
TU11890 lncRNA upstream 83496 55346783 ~ 55357633 (-) True G9593
TU11907 lncRNA upstream 123362 55386649 ~ 55388939 (-) True G9608
TU11952 lncRNA upstream 290537 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 314989 55578276 ~ 55584995 (-) True G9656
TU11966 lncRNA upstream 321761 55585048 ~ 55605575 (-) True G9650
AMCG00004628 mRNA downstream 43207 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004627 mRNA downstream 121436 55140905 ~ 55141489 (-) True AMCG00004627
AMCG00004625 mRNA downstream 126838 55116637 ~ 55136087 (-) True AMCG00004625
AMCG00004620 mRNA downstream 226973 55030260 ~ 55035952 (-) True AMCG00004620
AMCG00004621 mRNA downstream 244825 55009704 ~ 55018100 (-) True AMCG00004621
AMCG00004630 mRNA upstream 9056 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004631 mRNA upstream 48113 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004629 mRNA upstream 51109 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004637 mRNA upstream 196966 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004640 mRNA upstream 266363 55529650 ~ 55534145 (-) True AMCG00004640
TU11665 other downstream 642870 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 679695 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 898658 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1227403 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1406360 53686416 ~ 53856565 (-) False AMCG00004567
TU11901 other upstream 104298 55367585 ~ 55420058 (-) True G9604
TU11906 other upstream 118929 55382216 ~ 55388939 (-) False G9608
TU11941 other upstream 266376 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 266376 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 558862 55822149 ~ 55836177 (-) False AMCG00004653

Expression Profile