RNA id: TU11901


Basic Information

Item Value
RNA id TU11901
length 513
RNA type TUCP
GC content 0.55
exon number 5
gene id G9604
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55367585 ~ 55420058 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCTCTGttgctctcactctctgtctagGATCGGTGAACATATCAGTGAGTGCAGAAGCGATACACACCGAGACCATCTGTGACAATGAGCTGGTGACTGTGCCTGAACGAGGCCACATCGACACTGTAATTCGCCCTCTACTGGTGGAGCCTGAAGGGATGCAAAAGACCATCAGTCACAACTGGCTGCTCTGCCCAAGAGGGAACGTAGTGAAGGAGGAGGTTCAGTTACAGCTCCCAGGAGTCATTGTGGAGGGATCTGCCCGAGCCTCCATCTCTGTTTTGGGAGACCTGTTGGGCCGGGCTTTGCAGAACCTGGACAGCCTCCTCGTGATGCCCTACGGCTGTGGGGAGCAGAACATGGTGCGGTTTGCCCCCAACATCTACATCCTCAAGTACCTGGAGAGCACAGGACAGCTGACCCAGGCGATCAGGAGCAAGGCCTCTGAGTACCTGACGAGCGGTTACCAGCAGGAGCTCAACTACAAGCACAGCGATGGATCTTATAGCGC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11890 lncRNA downstream 9952 55346783 ~ 55357633 (-) True G9593
TU11867 lncRNA downstream 104298 55262925 ~ 55263287 (-) True G9570
TU11821 lncRNA downstream 251091 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 252674 55114342 ~ 55114911 (-) False G9533
TU11810 lncRNA downstream 293210 55074046 ~ 55074375 (-) True G9523
TU11952 lncRNA upstream 133766 55553824 ~ 55559308 (-) True G9643
TU11973 lncRNA upstream 158218 55578276 ~ 55584995 (-) True G9656
TU11966 lncRNA upstream 164990 55585048 ~ 55605575 (-) True G9650
TU11978 lncRNA upstream 186869 55606927 ~ 55607416 (-) True G9661
TU12018 lncRNA upstream 298079 55718137 ~ 55718729 (-) True G9698
AMCG00004629 mRNA downstream 31352 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004631 mRNA downstream 53814 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004630 mRNA downstream 74561 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004633 mRNA downstream 97424 55224835 ~ 55270161 (-) True AMCG00004633
AMCG00004628 mRNA downstream 147867 55205085 ~ 55219718 (-) True AMCG00004628
AMCG00004637 mRNA upstream 40195 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004640 mRNA upstream 109592 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004641 mRNA upstream 194554 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004648 mRNA upstream 262394 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004649 mRNA upstream 318134 55738192 ~ 55739532 (-) False AMCG00004649
TU11665 other downstream 747530 54576640 ~ 54620055 (-) False G9414
TU11664 other downstream 784355 54576640 ~ 54583230 (-) True G9414
TU11562 other downstream 1003318 54360098 ~ 54364267 (-) False AMCG00004590
TU11409 other downstream 1332063 54033464 ~ 54035522 (-) False AMCG00004575
TU11324 other downstream 1511020 53686416 ~ 53856565 (-) False AMCG00004567
TU11941 other upstream 109605 55529663 ~ 55543553 (-) False AMCG00004640
TU11944 other upstream 109605 55529663 ~ 55551225 (-) False AMCG00004640
TU12067 other upstream 402091 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 1060282 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 1192969 56613027 ~ 56694612 (-) False AMCG00004685

Expression Profile