RNA id: TU11952


Basic Information

Item Value
RNA id TU11952
length 2521
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G9643
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55553824 ~ 55559308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNgtagtccaggcgggagaggaccagggactggacgagcagctgggtcgagtagtcgCCCTTCatgcatcccagaatgctttgagGAGGGAACGGTGACGTCACCCCTGCTGCTAAGTAACCCTGACACTTCAAAGTAGAGACGCTAGGGCTcagccaatccacatgcacatccgggacactgccctctgctgactggacattattcaccttttgtttagaactgtataaaatgcaATTCCTGGAAGAGATCTGTAAAAAAGCTGTTTGAGCATGAGACTGCCTCATGTTCGCACTGTTATTCTTCTGGGCCGGCCTGCAATAAagacttcttttccatttgcaacacaactgcAGTTTTTATCCTTTAAAGGGGTTTCTTCAACGGTGTTCAcatttgttgcatttattttaaagtgtttgcaGTGATCATCACCATTAgtcaacatttcattttagtcACAAAAcaccaatacaaaaatatttgtatttttaattcacacaaatgtggtatttgaaatacatatacaaagaATAGGAAAATCAAATAGAttatataaatagtatttttccccccaaagtAATTtcagacatacatacacattgttCACAATCAAATGATATACAGCCAAATatggataaataaaaaataaatgaacaaaattgACATCCTGAATGCAAGAAGAATCAACTTACACAAACCTATAATTAAAAATTGTTACTAAAACTTAATTACTGATGTACTTGAActattctatttatttacttttaaagtaCCTCTCTCTGGGataggtttatttaaataagacctgtccaaaacacaaagcacataaGATATTGTAATGATTTAGAGATAGGACTCTTTCGGGGGTGGTAATATTACTGTTTtacgtttattttaaatttactttaacatttacttttgtattcaATTGACAAAATTTCAACATGCATAAATTTGAATTTTGTGGGGTCTCCTGTGTGACAAGCAGTGCTATGCATAATTTCCTGTAAGTGCAAAAAAAGtatggctgtatttgaaactgcATACTATCCTATTACATACTGCATGCCACATACTGATTTTCTGACTAGTAAGTAGTACAGTATGCAGTATGAAGATTAATGATTCAGTGtactatataaaaacaaacaaaaaaaatgtttcgtAAAGTTAAACTATGTTGTTGAAAACTACTTTTTATATGaggaaacataaatacaatgaacaAATTATCAATAAAATTAACCATGTAGTTACATTTGAATTGCAGAGAGCTTCCTCATTTGTAGACTAGTCATCCATTTTTGTAATTGAATGGAACGTCAGCCAACTGTGAAACATGATGGGAAGCAATATTGTAGTTGTATACTACATATATGGCTAATGTAGCCAGTGTTGTCAATTTAGCGCCTAGCAACAAATCTAGTGACTTTTTGGACAAACCTTAGCTACCTTCCGTAGAAGAAAGTCGCCAGTACTGCCCTGCGATGGCGTGGTCTTGCTGTCCTGCCCGGACTCGGAGGCTCACCTCTCTGCATCTACTCTGTTCAGTgagactgacagagacagaggggagcAGGCGAGAAGGCGGAGCAGCACAATCAGTTGACCGCACGGCAGTTGACATAGACTTGAATGAGCTGCACATGTGCAAACAGCGTTGTCAAGGACCAATCACGAATCTGTATTGTTTGCAAATGAGACGCGATGATGTCACGACTAAGCTAATCAGCATATGACATCATCTAGCGACACTTGACGACTTTTCTAGCAGACTTTAGCTACTTTCCATTGAAACTAGTTGGCAACACTGAATGTATCAAGCCATCTGGGTACTTTTACCATACTAAGTAGTATACTATGTCCAATATGCatactactgaaatgttggtatgtagtacatGTAGTATGGTAGATGAGGATTTGAATACAGCCTATgtgaatttaactttttttaaataatttactacATAAACAGTATACTAGGACGATTAGTATACTATCCACAGTTAAGTGCATAGTCCGTAGTATGCAATTTGAGACACGGCTATACAGTAGCCTATATTTCATAGCAGCTAAGGCCAACAACGTTATGACCTCTTTTCAAGCATCCAACAGTCCTACTCATCTTTGCAACAGATGCCCTGGCTGCAGGCTTCACACAGCGAGCTCTCGTGTGGTTTGGTCCTAACTGTTTCAGAGCAGACAGGATTGTATTCCCCGTCATCTGCACAGCCGTAGCAGTTCTTCTTAATTTTGCCCATCAGTCTAAGGAGAAGCTCCTCCACCGCCTGCTTGGTAAACCCCGGCTTTTCGTACTTGCCGCTGCAATGTCGACACGCCTGCCTGAACGCCCTCATCAGGACGGTGCCCCGGTCGCTGCGCAGCCGGTAGTGAAAGACAACCATGATCTGGGCGGAAGGCCACGTTTTGGAGCAGTTGCTGCACTTAAACCTGCGGAGAGAAAAAGGGGATGATTAGACTAGTTAGATAGTAACCTTTTACAAAATGGTAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11907 lncRNA downstream 164885 55386649 ~ 55388939 (-) True G9608
TU11890 lncRNA downstream 196191 55346783 ~ 55357633 (-) True G9593
TU11867 lncRNA downstream 290537 55262925 ~ 55263287 (-) True G9570
TU11821 lncRNA downstream 437330 55114342 ~ 55116494 (-) True G9533
TU11822 lncRNA downstream 438913 55114342 ~ 55114911 (-) False G9533
TU11973 lncRNA upstream 18968 55578276 ~ 55584995 (-) True G9656
TU11966 lncRNA upstream 25740 55585048 ~ 55605575 (-) True G9650
TU11978 lncRNA upstream 47619 55606927 ~ 55607416 (-) True G9661
TU12018 lncRNA upstream 158829 55718137 ~ 55718729 (-) True G9698
TU12020 lncRNA upstream 160656 55719964 ~ 55720217 (-) True G9700
AMCG00004640 mRNA downstream 19679 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 91098 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004629 mRNA downstream 217591 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004631 mRNA downstream 240053 55311400 ~ 55313771 (-) True AMCG00004631
AMCG00004630 mRNA downstream 260800 55272343 ~ 55293024 (-) True AMCG00004630
AMCG00004641 mRNA upstream 55304 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004648 mRNA upstream 123144 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004649 mRNA upstream 178884 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004653 mRNA upstream 255094 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004654 mRNA upstream 309339 55868647 ~ 55870960 (-) True AMCG00004654
TU11944 other downstream 2599 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 10271 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 133766 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 164885 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 933769 54576640 ~ 54620055 (-) False G9414
TU12067 other upstream 262841 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 921032 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 1053719 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 1126429 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 1188483 56747791 ~ 56750963 (-) True G10115

Expression Profile