RNA id: TU12018


Basic Information

Item Value
RNA id TU12018
length 259
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G9698
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55718137 ~ 55718729 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaagggagattttgtctaggactagcaggaattctgttgcaggaggagccaggtggggccagttaggtgtgaattgggggtaggtagacaaaagctacttaaagcagctgttgagaaagagctgtgctgtttctcgctgacaaaagttaggcagttgactagcagcaggaaccaagagacgtgtaaaaaagcaaaaaaaaaaaactaaaaaacaaataacatttagaagaatgtggccactacagtgtcaggctTGC

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11978 lncRNA downstream 110721 55606927 ~ 55607416 (-) True G9661
TU11966 lncRNA downstream 112562 55585048 ~ 55605575 (-) True G9650
TU11973 lncRNA downstream 133142 55578276 ~ 55584995 (-) True G9656
TU11952 lncRNA downstream 158829 55553824 ~ 55559308 (-) True G9643
TU11907 lncRNA downstream 329198 55386649 ~ 55388939 (-) True G9608
TU12020 lncRNA upstream 1235 55719964 ~ 55720217 (-) True G9700
TU12021 lncRNA upstream 2977 55721706 ~ 55722013 (-) True G9701
TU12027 lncRNA upstream 18836 55737565 ~ 55743297 (-) True AMCG00004649
TU12028 lncRNA upstream 18836 55737565 ~ 55743297 (-) False AMCG00004649
TU12047 lncRNA upstream 60696 55779425 ~ 55780607 (-) True G9719
AMCG00004648 mRNA downstream 33151 55682452 ~ 55684986 (-) True AMCG00004648
AMCG00004641 mRNA downstream 89154 55614612 ~ 55628983 (-) True AMCG00004641
AMCG00004640 mRNA downstream 183992 55529650 ~ 55534145 (-) True AMCG00004640
AMCG00004637 mRNA downstream 255411 55460253 ~ 55462726 (-) True AMCG00004637
AMCG00004629 mRNA downstream 381904 55314396 ~ 55336233 (-) True AMCG00004629
AMCG00004649 mRNA upstream 19463 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004653 mRNA upstream 95673 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004654 mRNA upstream 149918 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004652 mRNA upstream 171253 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004660 mRNA upstream 288551 56007280 ~ 56008866 (-) False AMCG00004660
TU11944 other downstream 166912 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 174584 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 298079 55367585 ~ 55420058 (-) True G9604
TU11906 other downstream 329198 55382216 ~ 55388939 (-) False G9608
TU11665 other downstream 1098082 54576640 ~ 54620055 (-) False G9414
TU12067 other upstream 103420 55822149 ~ 55836177 (-) False AMCG00004653
TU12437 other upstream 761611 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 894298 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 967008 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 1029062 56747791 ~ 56750963 (-) True G10115

Expression Profile