RNA id: TU12143


Basic Information

Item Value
RNA id TU12143
length 2245
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G9794
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56033498 ~ 56035949 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTTTTACaatcaagttattttattaatataaaaactcaaaaaagttctcaatttcaattttgtCAACTTTTGGTAACAATAAGGCAAAACAGGTGAGGacaataatcaatattaattattatccctctattaaaatgaatattatttgtattattgtatatatttatcatcACAGTGAGTTACAGTTCCCCTGCTGTGCCTGTACAgagtgaggggggggggctgtCTCAATggaatcaaatgtattattaattattatttattattattattattattattattattattataattaagtaCAATGCGGAGGTCAGAGGTGACTTGCAGCAGTTTTGGTCAGGAGTTTTTTGCATGTCGTCGTTTGCCGTCCTGACGCCGCCCCTTCTAAGCCACTTCCTTTGTGAGAATTTCCTATCTTATTTACAAATGTCATCACAcccctaaaaaacaaaacacccccccaaaacaaaaaccacaaaatatatatattggcaaAAATGGTCTTCAGAAAAACAGGAAGAGTGAGAAAGGAGGGAATGAAGGAGAAGGAGTGATACAGGAGATGAGAGAGGTGAAGAAAAGGTCAGAAATTGAGAGAGTGAGGAGATGAGGGGTGAAGGGAGAGTGAAagggaaaagaggaaaaaaaaaaaaaaaaaaaaaaaaagatacatacatCCCTTATGTAGACCTGCTGTTTCGGTCGGTATAagacaaacaaccaaaaaaaaaaacgtaagactccaaacaaactaaaaaagacaattaaaacaattagaaaacCAACAGATCCCATTAGTATGCTGCCCAATTAGTCATTATCAAGTCATTACAAAAACGTCACTGTGAACATTCAGTAGAAACAGAAGGCAATtgtggagagagtgtgtgtgtgtgtgtgtgtgtatgcatgtgcgtgtgtataGTGTGCTATAAAAAAAGTGTGCATtacagatgtatatatacagtacagttccGTCTCTGCATTACAGCTGTATATAAATAGTACAAAACAGTATCTGTATTACAGGAGAATATTTATAGTaaagtacagtgtaatacaggtgtatatatacagtacagtctcTGTAATACAcacacaacctctgTATTTATACACTGTATCAACAAGCAGACTGGGTCCAACCTGCACTCCAtccttctctctgtctgctGCACTGTATTGTAGCAGAACAGCTGTGTGGAGGTGAAGGGGTCCTGGCAAGGCTTGTATAGCAGTATTGTGCAGCACACAACAGTAAGGTAGAGCAGAGCATAGCGTTGTATAACAGTGTAGCACACCACAACGGAGTATAGGacaatacagtatagtacaATAGTGCAGTACCGTGTAGATGAATATTGCAGTGCTGTATTATAGTGaagtagtacagtacagactaTAAAGTACTGTGCTGGACTATATTGTTCTGAACTGGATTGTATGGCACtacatactgtattatattttattggatTGCAGTAAACCATGTTAGATTGTATTTCAGTATACTATACAATATTAAACTAAAGAAAccagcactgtgctgtactgcactacaacataccacactgcactgtattacattttacaacactGCCCCCTGCTACATTATATCACACTTTAATATAGTAATACACTAGATTGTACCGTATCAGATTGTTCTGTAATATAACCATCTACTTCTTTTCACTATACTACACTAGAATTCAGTGTATTGTAGTATAAAACACTACACTAGATTGTACTTTACAGTGATGTAGTTTACTATTTCCTTTTAGTATCATAAAGTACACTATTGCATTATACAATATACTACATGACACTAATGTACTGCATTGCATCATTGTACACTACATTGCACTGTACTGCAGATTATATTACACTATGATAAACTACATCGCTTTGTCCTACACTCTCATGGTATTACACTATAGTACTGTACATAACTATTACACTGCTATGTGAAAGATATTGTGCACAGATGGCTTTAGTGGCATTGGTTGCAGTCCCTGAACTGATGGTAACACagtgtataaatgttaaaaatgtattcatttaaaaaacccTAATTACAGTGAGATAACAAGGGAGTGGCACTGCGGTTTAGAGTcgttttgtcattttttgtttcaattatttgtttccttcctcaaacaaaaaatatacagatttatatatatatttatattaaaacataaaaaatatattctggtCGCAGTAACGGCAGCTTCAgtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12137 lncRNA downstream 25460 56006051 ~ 56008038 (-) True AMCG00004660
TU12085 lncRNA downstream 135436 55897856 ~ 55898062 (-) True G9751
TU12082 lncRNA downstream 139412 55890253 ~ 55894086 (-) False AMCG00004652
TU12047 lncRNA downstream 252891 55779425 ~ 55780607 (-) True G9719
TU12027 lncRNA downstream 290201 55737565 ~ 55743297 (-) True AMCG00004649
TU12446 lncRNA upstream 30600 56066549 ~ 56068862 (-) True G10007
TU12474 lncRNA upstream 70764 56106713 ~ 56109085 (-) True AMCG00004665
TU12488 lncRNA upstream 93493 56129442 ~ 56130558 (-) True G10034
TU12516 lncRNA upstream 310924 56346873 ~ 56352140 (-) False AMCG00004672
TU12521 lncRNA upstream 317979 56353928 ~ 56354406 (-) True G10061
AMCG00004660 mRNA downstream 24632 56007280 ~ 56008866 (-) False AMCG00004660
AMCG00004652 mRNA downstream 139423 55889982 ~ 55894075 (-) True AMCG00004652
AMCG00004654 mRNA downstream 162538 55868647 ~ 55870960 (-) True AMCG00004654
AMCG00004653 mRNA downstream 187327 55814402 ~ 55846171 (-) True AMCG00004653
AMCG00004649 mRNA downstream 293966 55738192 ~ 55739532 (-) False AMCG00004649
AMCG00004663 mRNA upstream 57160 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004665 mRNA upstream 71805 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004664 mRNA upstream 77456 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004662 mRNA upstream 111538 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004671 mRNA upstream 149268 56185217 ~ 56212864 (-) True AMCG00004671
TU12067 other downstream 197321 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 482273 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 489945 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 613440 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 444391 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 577078 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 649788 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 711842 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 736553 56772502 ~ 56775440 (-) True G10079

Expression Profile