RNA id: TU12522



Basic Information


Item Value
RNA id TU12522
length 374
lncRNA type intronic
GC content 0.50
exon number 2
gene id G10061
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56353928 ~ 56354406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


actgactgactgggcactacagcacattaacactgactgactgactggacaatacagcacattaacactgactgactggacactacagcacattaacactgactgactgactgactggacactacagcacattaacactgactgactgactggacactgcagcacattaacactgactgactggacactacagcacattaacactgactgactgactggacactacagcacattaacactgactgactgactggacactacagtacattaacactgattgactgactggacactacagtacattaacactgactgactgactggacactacagtacattaacactgactgactggatactccagcacattaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12516 lncRNA downstream 1788 56346873 ~ 56352140 (-) False AMCG00004672
TU12488 lncRNA downstream 223370 56129442 ~ 56130558 (-) True G10034
TU12474 lncRNA downstream 244843 56106713 ~ 56109085 (-) True AMCG00004665
TU12446 lncRNA downstream 285066 56066549 ~ 56068862 (-) True G10007
TU12143 lncRNA downstream 317979 56033498 ~ 56035949 (-) True G9794
TU12528 lncRNA upstream 116116 56470522 ~ 56471426 (-) True G10067
TU12530 lncRNA upstream 135162 56489568 ~ 56491763 (-) True G10068
TU12535 lncRNA upstream 161095 56515501 ~ 56516414 (-) True G10073
TU12554 lncRNA upstream 174210 56528616 ~ 56733600 (-) True G10082
TU12568 lncRNA upstream 252015 56606421 ~ 56647806 (-) True G10093
AMCG00004671 mRNA downstream 141064 56185217 ~ 56212864 (-) True AMCG00004671
AMCG00004662 mRNA downstream 191597 56147487 ~ 56162331 (-) True AMCG00004662
AMCG00004664 mRNA downstream 238004 56113405 ~ 56115924 (-) True AMCG00004664
AMCG00004665 mRNA downstream 244929 56107754 ~ 56108999 (-) False AMCG00004665
AMCG00004663 mRNA downstream 257537 56093109 ~ 56096391 (-) True AMCG00004663
AMCG00004674 mRNA upstream 47055 56401461 ~ 56409291 (-) True AMCG00004674
AMCG00004677 mRNA upstream 56579 56410985 ~ 56414424 (-) True AMCG00004677
AMCG00004678 mRNA upstream 62650 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004676 mRNA upstream 70182 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004675 mRNA upstream 96383 56450789 ~ 56482561 (-) True AMCG00004675
TU12067 other downstream 517751 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 802703 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 810375 55529663 ~ 55543553 (-) False AMCG00004640
TU11901 other downstream 933870 55367585 ~ 55420058 (-) True G9604
TU12437 other upstream 125934 56480340 ~ 56484848 (-) False AMCG00004675
TU12544 other upstream 258621 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other upstream 331331 56685737 ~ 56690492 (-) True AMCG00004692
TU12597 other upstream 393385 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 418096 56772502 ~ 56775440 (-) True G10079

Expression Profile