RNA id: TU12548


Basic Information

Item Value
RNA id TU12548
length 1331
RNA type TUCP
GC content 0.46
exon number 3
gene id G10079
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56772502 ~ 56775440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGGTTCCTTACCCTCGTCTTGTTAATCCACAGGGGGGCCACAAGACCTCCCAGCTGCCTCTGctgtccagctcctccagcagctcctccagcaTCCAGCAGTGCCTCTCGCCgccccctgccctgcccccGGCCCCCCTGGAGCAGGACCAGCACGTGGGACACGCCATCAGCCGAGCCCCCCACTGTTCCCACCCCATCATCACAGGGGGGATGACAGTCAATGGCAATGTCTTCATCTATAACGGCTCCACCATCAACAACGCCCCCCTGGCCTCGGCGCCctcccctgcccctgccccctccccgtCGCTCCCTCACTCGGTGGAGGAGAGTCCAGTGCCCACGCAGGAGCAGCAGGGGCCGCCAGGGAGCGTccaggagagagggaaggattTCCACATCTCGGTggaggagagcagagagagggacTGTGGACTGTAGAGTGTGCTATAGACTGGACTGTAGACTGGTATATTATGGACTGTACTTTATagactgttattattatttatttttgatctgaTTATGGACAGTACACTAGACTATTGTCTGTATTATATGCTCTtgatatgtatacatacaaggCCTTATAGACTTTATTATTGACTGTGCTATGTACTATAGCCTATACAAAGTATTGTGTTCTACTATTATATACTGTGCTAATTAACGAGGAAGGCACTGAAAACTAGTCACTCTGTGTacacctctctgtgtctctctcaaattcaaagtgctttattggcaggacCTGTATTacgtattgccaaagcaatagTGACAGATGTCAAACAGCttcaaatgcatatatatatatattacaaacatatacatgtaaatacacatacatacacctATTTATGGTCATTGATTATGGTCATTGACAATAaacagatagatatatatacataaaagtaAATTAGTAAATTTAAACTGATTgggagaaataataatattatcaataataCTATGAACATTAGTATCTTTAACATTGTCTGTATACAGGGGTCCCTCCTATGTGAGGGACTCAGGGGCCCCTGTggccctcaggctgtggcatgCAGCTGTAAACTGGACTGCTGGTCTCCTCTCCCCGGAGGACTGGGAGTTATTCCGAGTCTGGCAGGTCGGGGACTTTCTGACAGAGCTCTGTTCTTTTGGGGACAAATTGTGttcttatatgtatatatttttctctctctcttgtacAGTTTCTCACCAGCTAGATCAGCACAATGTTTAAtgctgtatgtgtttttaacaaGGGCACTTTTTATTGTTACCCTAAACcctaaaaaacattaaaacaattgaatCATTGTgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12598 lncRNA downstream 18111 56753025 ~ 56754391 (-) True G10116
TU12542 lncRNA downstream 19567 56665059 ~ 56752935 (-) True AMCG00004685
TU12554 lncRNA downstream 38902 56528616 ~ 56733600 (-) True G10082
TU12589 lncRNA downstream 58314 56712389 ~ 56714188 (-) True G10108
TU12585 lncRNA downstream 81054 56690719 ~ 56691448 (-) True AMCG00004690
TU12606 lncRNA upstream 1686 56777126 ~ 56778469 (-) False G10121
TU12628 lncRNA upstream 84897 56860337 ~ 56861643 (-) True G10135
TU12555 lncRNA upstream 243855 57019295 ~ 57019807 (-) False G10082
TU12652 lncRNA upstream 250097 57025537 ~ 57028915 (-) False G10157
AMCG00004689 mRNA downstream 34253 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004693 mRNA downstream 66688 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004691 mRNA downstream 69989 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004690 mRNA downstream 80796 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004692 mRNA downstream 82318 56686287 ~ 56690184 (-) False AMCG00004692
AMCG00004698 mRNA upstream 49581 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004699 mRNA upstream 71243 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004697 mRNA upstream 80916 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004704 mRNA upstream 122163 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004706 mRNA upstream 157957 56933397 ~ 56956495 (-) True AMCG00004706
TU12597 other downstream 21539 56747791 ~ 56750963 (-) True G10115
TU12544 other downstream 77890 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other downstream 82010 56685737 ~ 56690492 (-) True AMCG00004692
TU12437 other downstream 287654 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 936325 55822149 ~ 55836177 (-) False AMCG00004653
TU12607 other upstream 1686 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 13312 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 250097 57025537 ~ 57028329 (-) True G10157

Expression Profile