RNA id: TU12554


Basic Information

Item Value
RNA id TU12554
length 1418
lncRNA type read_through
GC content 0.39
exon number 6
gene id G10082
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56528616 ~ 57019807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacagtacattaacactgactgactggacactacaggacattaacactgactgactggacactacagtacattaacactgactgactggacactacagcacattaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactggacactacagcacattaacactgactggacactacagcacattaacactgactgactgagactCTCACTCACTTTGCTTGTCAGTGAGGGAGCAGTTTCTGCCCAGTGCCTTGAACTCTTTACACAGGGAAGAATATCGTGTCTCCAGGTctgagatctggaggattagggTGGGGTCTCCCTGCCCGTCGGTACACTGCCTGCTTACATTCGGACACGGGGGGGTGGGCTCCTGTCTTCCAGACACTTGGAGACTGTTGGCGGGGGGAAGGATAGGTCTCTTCCCCTTGAGACTGTCATCATTGTACTCATGCAGAGAGGTGTAGTTATCCGATTCATCCATcaCTGTGTCTGTAGTATCACGTCTGCAGATGAGCTGTAATGTGAATAATTATACTCTCTCTTTGTATTCTTTCAACTAGttgctctctctccttcctttcctctctttctttttctctctctaatgcTGGCTCATTTGTCCTCccttgctgtctctctctgtccctgctGTTTCACTGGATAAGGTTCAAAGCGTGTCTCTCTGTACTTTGTCACTCTAACCTCTCTCGCTCTGTTTGCTATTTATCAGCATGGGGTGCAGAGGGTGTGGGGAAGAAGAAAGTACAGAATGAACCAACACAGAGAgaatgggagagggagagggaaagggagagagatagggagggagagagggagagagggagaaagggaaagggagagagattaATTGAGAAATGGAGTgttgaaacactgactgactggacaccaCGGTCCATTAACACAACAcgtggaggaggagagggagagattgggAATCTGACGCAATAAGTGAATAACACAAAACTGGACATGCcgaaattgtgaaatatgtACACTTCCTCtatctctgactctctctctctgattgcaTAATGTTTTGAGTGCACCTGAAACAACAATATCCTCTGCTTCACACTGAGGGGGGTACACACACTGCCtggctgactggacactacagtacattaacactgactgactgactggacactacagtacattaacactgactgactagacactacagtacattaacactgactgactgactggacactacagcacataaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattac

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12535 lncRNA downstream 12202 56515501 ~ 56516414 (-) True G10073
TU12530 lncRNA downstream 36853 56489568 ~ 56491763 (-) True G10068
TU12528 lncRNA downstream 57190 56470522 ~ 56471426 (-) True G10067
TU12521 lncRNA downstream 174210 56353928 ~ 56354406 (-) True G10061
TU12522 lncRNA downstream 174210 56353928 ~ 56354406 (-) False G10061
TU12598 lncRNA upstream 19425 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 28445 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA upstream 43526 56777126 ~ 56778469 (-) False G10121
TU12628 lncRNA upstream 126737 56860337 ~ 56861643 (-) True G10135
TU12555 lncRNA upstream 285695 57019295 ~ 57019807 (-) False G10082
AMCG00004682 mRNA downstream 16923 56494656 ~ 56511693 (-) True AMCG00004682
AMCG00004675 mRNA downstream 46055 56450789 ~ 56482561 (-) True AMCG00004675
AMCG00004676 mRNA downstream 85660 56424588 ~ 56442956 (-) True AMCG00004676
AMCG00004678 mRNA downstream 105710 56417056 ~ 56422906 (-) True AMCG00004678
AMCG00004677 mRNA downstream 114192 56410985 ~ 56414424 (-) True AMCG00004677
AMCG00004689 mRNA upstream 2243 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004698 mRNA upstream 91421 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004699 mRNA upstream 113083 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004697 mRNA upstream 122756 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004704 mRNA upstream 164003 56897603 ~ 56910267 (-) True AMCG00004704
TU12437 other downstream 43768 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 692439 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 977391 55529663 ~ 55551225 (-) False AMCG00004640
TU11941 other downstream 985063 55529663 ~ 55543553 (-) False AMCG00004640
TU11906 other downstream 1139677 55382216 ~ 55388939 (-) False G9608
TU12597 other upstream 14191 56747791 ~ 56750963 (-) True G10115
TU12548 other upstream 38902 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 43526 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 55152 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 291937 57025537 ~ 57028329 (-) True G10157

Expression Profile