RNA id: TU12555


Basic Information

Item Value
RNA id TU12555
length 381
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G10082
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56528616 ~ 57019807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggaggtgtgAGTGTCCAAAGTAGATATTTACAGATTCAATATTCAAGAAACACTAAAGGAGAGAGAGCATACACTGAGTACATTAACACTACtacacacaacagcacattcacactgactgactggacactacagcactttaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactgactggacactacagtacattaacactgactgactggacactacagcacattaacactgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12556 lncRNA downstream 124676 56683137 ~ 56894619 (-) True G10083
TU12628 lncRNA downstream 157652 56860337 ~ 56861643 (-) True G10135
TU12557 lncRNA downstream 198509 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA downstream 240826 56777126 ~ 56778469 (-) False G10121
TU12598 lncRNA downstream 264904 56753025 ~ 56754391 (-) True G10116
TU12652 lncRNA upstream 5730 57025537 ~ 57028915 (-) False G10157
AMCG00004708 mRNA downstream 36679 56975119 ~ 56982616 (-) True AMCG00004708
AMCG00004706 mRNA downstream 62800 56933397 ~ 56956495 (-) True AMCG00004706
AMCG00004704 mRNA downstream 109028 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004697 mRNA downstream 160689 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004699 mRNA downstream 166249 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004705 mRNA upstream 17680 57037487 ~ 57050034 (-) True AMCG00004705
TU12609 other downstream 227134 56788752 ~ 56792161 (-) True G10123
TU12607 other downstream 240826 56777126 ~ 56778469 (-) True G10121
TU12548 other downstream 243855 56772502 ~ 56775440 (-) True G10079
TU12597 other downstream 268332 56747791 ~ 56750963 (-) True G10115
TU12583 other downstream 328803 56685737 ~ 56690492 (-) True AMCG00004692
TU12651 other upstream 5730 57025537 ~ 57028329 (-) True G10157

Expression Profile