RNA id: TU12597


Basic Information

Item Value
RNA id TU12597
length 608
RNA type TUCP
GC content 0.43
exon number 6
gene id G10115
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56747791 ~ 56750963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAACTCTGAGGTGTACaggtagaaagagagagaggagaaataAACCAATGAACCAGAAAGAATAAACGACACGCACGGAAAAGAGAGCGAAAGAGacagtgaaggagagagagagagagagagagagagagaggagtggagtgagacagacagattgCTGACCAATTTTGACGTCTACATACTggGATGATCTCGCTGGTCTGGGTGTCAATCCCTGTTCTGTTTGGTCACATGATCTTCGCGTTTCCAACGGTTTCACCTGCTGTACAGCATGATGAAAATGGATGCATTCTCTGTGAGCCAGgttatTACCGCAGCAGTTGTACTCAGTGCTCCCGCTGCGGGGCAGACTCTTACACTGAGTCAGTCAACAGTGAACCACGCTGCCACTCCTGCAACAGAGACTGCAGAGAGGTGTTTAACATGGAGGTGGTGCAGAACTGTTCCAAAGTGAGGCCCCTGCTGTGCCGCTGCAAACCAGGCTTCCACTGTATGAACAATTCCTCCCATGGAGACTGCGACCAATGCACCAAGAACATAAACGCAgAGTGTGGCGCCGGTACGTTCCTAAACCAGACCTCTGGAAACTGCGACCCTCACACCAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12554 lncRNA downstream 14191 56528616 ~ 56733600 (-) True G10082
TU12589 lncRNA downstream 33603 56712389 ~ 56714188 (-) True G10108
TU12585 lncRNA downstream 56343 56690719 ~ 56691448 (-) True AMCG00004690
TU12568 lncRNA downstream 99985 56606421 ~ 56647806 (-) True G10093
TU12535 lncRNA downstream 231377 56515501 ~ 56516414 (-) True G10073
TU12598 lncRNA upstream 2062 56753025 ~ 56754391 (-) True G10116
TU12557 lncRNA upstream 11082 56762045 ~ 56820786 (-) True G10084
TU12606 lncRNA upstream 26163 56777126 ~ 56778469 (-) False G10121
TU12628 lncRNA upstream 109374 56860337 ~ 56861643 (-) True G10135
TU12555 lncRNA upstream 268332 57019295 ~ 57019807 (-) False G10082
AMCG00004689 mRNA downstream 9542 56735843 ~ 56738249 (-) True AMCG00004689
AMCG00004693 mRNA downstream 41977 56705344 ~ 56705814 (-) True AMCG00004693
AMCG00004691 mRNA downstream 45278 56698321 ~ 56702513 (-) True AMCG00004691
AMCG00004690 mRNA downstream 56085 56690817 ~ 56691706 (-) False AMCG00004690
AMCG00004692 mRNA downstream 57607 56686287 ~ 56690184 (-) False AMCG00004692
AMCG00004698 mRNA upstream 74058 56825021 ~ 56836934 (-) True AMCG00004698
AMCG00004699 mRNA upstream 95720 56846683 ~ 56853046 (-) True AMCG00004699
AMCG00004697 mRNA upstream 105393 56856356 ~ 56858606 (-) True AMCG00004697
AMCG00004704 mRNA upstream 146640 56897603 ~ 56910267 (-) True AMCG00004704
AMCG00004706 mRNA upstream 182434 56933397 ~ 56956495 (-) True AMCG00004706
TU12544 other downstream 53179 56613027 ~ 56694612 (-) False AMCG00004685
TU12583 other downstream 57299 56685737 ~ 56690492 (-) True AMCG00004692
TU12437 other downstream 262943 56480340 ~ 56484848 (-) False AMCG00004675
TU12067 other downstream 911614 55822149 ~ 55836177 (-) False AMCG00004653
TU11944 other downstream 1196566 55529663 ~ 55551225 (-) False AMCG00004640
TU12548 other upstream 21539 56772502 ~ 56775440 (-) True G10079
TU12607 other upstream 26163 56777126 ~ 56778469 (-) True G10121
TU12609 other upstream 37789 56788752 ~ 56792161 (-) True G10123
TU12651 other upstream 274574 57025537 ~ 57028329 (-) True G10157

Expression Profile