RNA id: TU136


Basic Information

Item Value
RNA id TU136
length 1752
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G112
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 614191 ~ 616320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcggaggactgaaacacatcattcaatacttttaacagggccgtttctgtactgtGGCCGGAAaggaagcctgattgaaatgcttcataaagatgattatcggttaaaaaagcttgcagttggtttgcaactactttctctagaaccttagaaaggaagcgAAGGTTTGAGATAGGTTGATAGTGTTTAAGGTATGacaggtatgacatttgctgtcttcagtcagttggcacatcccctgttctaagtgtcaattggaatattttagttagcggtctatgaataatttccctaatttctttaagtaattttggaaatgtaccatctggcccaggtgatttgttttttttaaattctgctagtccctttagtacctcctcttcatttatcctgatctgtcTTAGAGTTTGAATGGACTCATTGTTAACCTGTGTCatgttataaaaaatatgtatatttttaaagatacttAAATTTTTAGCCTTTAGtggtttcacttcctcctttattgacctcttgctgttacagtattttaaaaaaaatgcattagtaTTAGCTCCAATAGCTAtgtttctatatattctttgtattttatttcattttgatcccttttgtatgctctatacaacattattttattttttttatatttttttgcatacttctaattaaaccattttggccaatgttttttggtcctcgatttgctaagttttggtacaaacgtctcatatttctttaaatataaccatccatttttgactgaatctgtatctaGTGTTCCCCAgcctaactcttctaagtgctgcatcataccttcaaggtttgcttttctaaaattgtagaccattgttctAGACTTGTTCTAGGGCTGCGATTAAATCCACTAAtccaaaactacagaactgtactcagttgcggcttcatttttagttagatgccactttctaatcataaatgtaactgctatgatgtacaggtttgtagttttctatttgCGGGTAAACCGGcccttggtccttgttttttcaAGTATGCCTcgaagctaaccatattgtgatcacagtttgcacttggttctctaactaatatccctctgactctgtcttggtaatttgaaaatatcaaatcaatgctctctctctctctggttggttccctgacaaattgagttagaaagcagtcatttaccaactcaaccatttctatttctgcttctgtagtcccaactgggctttcccagtctatgtttgggaaattgaaatcccccattataacagccacatccttacTACATGCAGTCTTGATTAATTAGTCAGAAAGATGTTACATTGTACAATCTGAATTGGTGGGCTGTAACacaccactaatcctctggatcttttgttcaaaagtttaaaccACAAAGATTCTGCTTCATTAGCATTATCTAATTTGAGGTAttccccaccacctcttcgaatTATggctgtctctcctaaactgtgtgtatcctttcaacttgtattcattcattttctgtaagccatgtttctgtcactcctacaacatcataatcatacaccagcactgtggcttcaaGGTCCAACaacttgttccttatactcctggcattgaggtacacacatttcaggactttcctactagcagtttccctttgttttctttcattagtaTGCATTAGTTTATGCATTTGGATtaattgtactttgtttttttaagaaaccgAGCTTTATGTATGTTCCATGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125 lncRNA downstream 55835 519101 ~ 558734 (-) True G103
TU109 lncRNA downstream 128669 485584 ~ 485900 (-) True G89
TU150 lncRNA upstream 118446 734766 ~ 769986 (-) True G122
TU205 lncRNA upstream 328918 945238 ~ 957196 (-) True AMCG00003400
TU225 lncRNA upstream 417340 1033660 ~ 1035682 (-) True G188
TU251 lncRNA upstream 525918 1142238 ~ 1158563 (-) True G212
TU305 lncRNA upstream 971497 1587817 ~ 1588261 (-) True G257
AMCG00003392 mRNA downstream 17391 594275 ~ 597178 (-) True AMCG00003392
AMCG00003391 mRNA downstream 74828 538794 ~ 539741 (-) True AMCG00003391
AMCG00003390 mRNA downstream 374056 232621 ~ 240513 (-) True AMCG00003390
AMCG00003389 mRNA downstream 537061 62457 ~ 77508 (-) True AMCG00003389
AMCG00003393 mRNA upstream 3246 619566 ~ 627690 (-) True AMCG00003393
AMCG00003394 mRNA upstream 44208 660528 ~ 664276 (-) True AMCG00003394
AMCG00003399 mRNA upstream 55041 671361 ~ 802713 (-) True AMCG00003399
AMCG00003401 mRNA upstream 302992 919312 ~ 930578 (-) True AMCG00003401
AMCG00003400 mRNA upstream 328903 945223 ~ 957169 (-) False AMCG00003400
TU425 other upstream 1781322 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1781322 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1821407 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2778337 3394657 ~ 3430272 (-) True G531
TU920 other upstream 4034451 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile