RNA id: TU1412


Basic Information

Item Value
RNA id TU1412
length 311
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1196
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7364967 ~ 7365277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTGCATATGAtatcacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccggttagtaagacgaaggtgagtctctcattagtattgttagtcggacatcaaataactacgcaggttagtatttatatCAGGTAACTTcccgttatatatatatcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaaggataggcagggccacctataatctggtgtctattaacgtgtgtcaatttcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1359 lncRNA downstream 291353 7073401 ~ 7073614 (-) True G1147
TU1323 lncRNA downstream 513208 6841769 ~ 6851759 (-) True G1117
TU1319 lncRNA downstream 539251 6818657 ~ 6825716 (-) True G1114
TU1185 lncRNA downstream 1077427 6287328 ~ 6287540 (-) True G998
TU1180 lncRNA downstream 1377992 5986565 ~ 5986975 (-) True G993
TU1461 lncRNA upstream 126004 7491281 ~ 7491480 (-) True G1238
TU1448 lncRNA upstream 134156 7499433 ~ 7504188 (-) True G1228
TU1449 lncRNA upstream 134156 7499433 ~ 7504188 (-) False G1228
TU1478 lncRNA upstream 423396 7788673 ~ 7788914 (-) True G1252
TU1480 lncRNA upstream 431173 7796450 ~ 7796858 (-) True G1254
AMCG00003518 mRNA downstream 137449 7221488 ~ 7227518 (-) True AMCG00003518
AMCG00003517 mRNA downstream 155999 7167827 ~ 7208968 (-) True AMCG00003517
AMCG00003515 mRNA downstream 229853 7086640 ~ 7135114 (-) True AMCG00003515
AMCG00003514 mRNA downstream 307660 7053793 ~ 7057307 (-) True AMCG00003514
AMCG00003510 mRNA downstream 329351 7023085 ~ 7035616 (-) True AMCG00003510
AMCG00003520 mRNA upstream 15821 7381098 ~ 7407614 (-) True AMCG00003520
AMCG00003519 mRNA upstream 55779 7421056 ~ 7446873 (-) True AMCG00003519
AMCG00003528 mRNA upstream 124420 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003531 mRNA upstream 913619 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003536 mRNA upstream 1288481 8653758 ~ 8672876 (-) True AMCG00003536
TU1027 other downstream 2008499 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 2703600 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 3934695 3394657 ~ 3430272 (-) True G531
TU462 other downstream 4926146 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 4963072 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 3585899 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 3738049 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 4558531 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 4710761 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 5669676 13034953 ~ 13035489 (-) True G2236

Expression Profile