RNA id: TU1436


Basic Information

Item Value
RNA id TU1436
length 437
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1218
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7489445 ~ 7489881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGACATAAATGTCATCAATCAAAGCAccattttttctatttctcaaatattattttgtatactaATGATGTTCCCATAATTTGAAGACAAATGTAATGAACTGCATGCCAATGACTGTATTCTAGCACCTGTGACACGGTAAAGCAGCTCCCTCTGGTGAGGAAACTGCAGATATCAACTGATGCTGGTGCAGAAGCACTTCAGAGAGAATGATGCCTGTCACACATCATACGTTATCAGAAAAGCAGCTCACTGGTATATGCAGGGTCCAAACACGGTCCCCAAGTTCTGCACTGACATCTTATTGGTCTCGCTGTGAGACGCCACTCGGAGCCGGAAGTGGACTAGGTGCCGGAGCAGACGCTGATGCTCTGCAGGAGGACTGTCCAGCTCAGTCTTCAGGCAACTGTTCAGATCATCCTCATCTTTACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1403 lncRNA upstream 123968 7364944 ~ 7365477 (+) True G1187
TU1358 lncRNA upstream 415836 7073404 ~ 7073609 (+) True G1146
TU1177 lncRNA upstream 1503051 5986038 ~ 5986394 (+) True G990
TU1170 lncRNA upstream 1533625 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 1659700 5829459 ~ 5829745 (+) True G960
TU1445 lncRNA downstream 8186 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 33980 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA downstream 36978 7526859 ~ 7528458 (+) True G1242
TU1479 lncRNA downstream 306570 7796451 ~ 7796854 (+) True G1253
TU1499 lncRNA downstream 785881 8275762 ~ 8276983 (+) True G1271
AMCG00003527 mRNA upstream 7239 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003529 mRNA upstream 29969 7453411 ~ 7459476 (+) True AMCG00003529
AMCG00003522 mRNA upstream 50998 7422803 ~ 7438447 (+) True AMCG00003522
AMCG00003523 mRNA upstream 79316 7408545 ~ 7410129 (+) True AMCG00003523
AMCG00003516 mRNA upstream 442042 7045216 ~ 7047403 (+) True AMCG00003516
AMCG00003524 mRNA downstream 8159 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003521 mRNA downstream 15582 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003525 mRNA downstream 28170 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003526 mRNA downstream 42672 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003530 mRNA downstream 488894 7978775 ~ 7980197 (+) True AMCG00003530
TU1202 other upstream 994540 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1159244 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1765947 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2287627 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 4000304 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4083850 11573731 ~ 11577329 (+) True G1989

Expression Profile