RNA id: TU1479


Basic Information

Item Value
RNA id TU1479
length 404
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1253
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7796451 ~ 7796854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacatggcattgattcaacaaggtgttgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgattgAGATtcgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttcaaatgattcgaccttgtgacatggtgcattatcctgctggaattagccatcagaggatgggtacttggtggtcataaagggatggacatggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1466 lncRNA upstream 45986 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 267993 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 298107 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 306570 7489445 ~ 7489881 (+) True G1218
TU1403 lncRNA upstream 430974 7364944 ~ 7365477 (+) True G1187
TU1499 lncRNA downstream 478908 8275762 ~ 8276983 (+) True G1271
TU1519 lncRNA downstream 543412 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 646886 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 864178 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 902612 8699466 ~ 8700554 (+) True G1347
AMCG00003526 mRNA upstream 248897 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 265326 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003521 mRNA upstream 282041 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 292436 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003527 mRNA upstream 314245 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003530 mRNA downstream 181921 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003532 mRNA downstream 487973 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 520184 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 852303 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 1022558 8819412 ~ 8842419 (+) True AMCG00003535
TU1202 other upstream 1301546 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 852271 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1458974 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1980654 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3693331 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3776877 11573731 ~ 11577329 (+) True G1989

Expression Profile