RNA id: TU1499


Basic Information

Item Value
RNA id TU1499
length 1197
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G1271
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8275762 ~ 8276983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCgtatttaatcaatttattgAGAAATTAGggaatactgtacattttacaagtaaaacagtgtaataaaatgtaaaaatacaatcacTTTTAGATAACTTACAAATGTCAGGATTAACTAGATGAGATGTGCATATGAGGACTTCAAGCAGTGAGAATAAATGCAGGTGacttttatcatttaattttacatgtGCTGCTTATTTACTGGAATAAAACACAGGCATGGTGAATAGTATCGCCTGAAGTCCTGAACATTTCCCATTGGGTGACTATGTGACAAGCTCTAAACATGTCATGGGACACCCCATACAAAAGTGTTTACTGTGCTCTAGAAGGACTAGCtggTCCACGGATCGAGGTGTGATAAAACATTAACACCTGGCAAGCAATtacaaactgattttatttactgGACATGCAGTAGTtacaatacagattttttttttaagtacaagCAGTCAAAAAATCACCCAACTCAATATGTGATTTTGCTCCCTAGTTCCTCttctacaaaacaaataacataatcaataataaatacagctcAATGATTGAATGCATCAAACTGATTTTACTCACTAAGCAAAACCCACATTTCAACACACTGACCTCTATAATGATGTGTCCTAGTCTCCCTTAAGTGATCTTTATTTGATTCTTATTTATTgactgattggctgattgattgtttaattgattgattgattgattgattgattgattattttgtcCATATTGCTTGCCCTATCGAAAGAGtttctgaaaagatgcattaaaaccaaaaaccatTGCTTGAAGTGTGCACTACAAACATATTAGCATGTAATGCTATTAGTGCTCAAAAACGATGTCCAAAGAATCACAGAAAAATGCATATGgtgaaatgcatattaaatcAGTAGAGATCCAGAAATGCATTTGGGTTTAGCTATTGGACTGCTCTGCATGCAGCTGATTCCACCTACACTTCAATAGAGTCGGTAATGTAGGTGCAGGTCTGTCTGAGCAGGTATCCAGAGCATATTAACAGCACTTCAGTGCCACCTAGTGCTGTTCTAAAAATCCTCTCTGTAGGTTTCTTTAAACGTGGAATTTACTTTGAACTAATTGCAGCACTTCTTGTAAAACCTCCTCCCTCGAAGGACTGGCATCAACAATAGTACAGACAGGATCTCCAATCCTCCGGTACGTCTC

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479 lncRNA upstream 478908 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 525297 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 747304 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 777418 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 785881 7489445 ~ 7489881 (+) True G1218
TU1519 lncRNA downstream 63283 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 166757 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 384049 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 422483 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 566844 8843827 ~ 8844082 (+) True G1375
AMCG00003530 mRNA upstream 295565 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 728208 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 744637 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003521 mRNA upstream 761352 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 771747 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003532 mRNA downstream 7844 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 40055 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 372174 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 542429 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 623473 8900456 ~ 8941678 (+) True AMCG00003541
TU1202 other upstream 1780857 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 372142 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 978845 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1500525 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3213202 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3296748 11573731 ~ 11577329 (+) True G1989

Expression Profile