RNA id: TU1509


Basic Information

Item Value
RNA id TU1509
length 928
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1281
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8288835 ~ 8289762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCTTCCAGCGCACTGGACTGAGCTCTCTGATGCGGTCCCCCATATCCTCGTCCACGTTGAAAGTATTGATGACCGAATTGATTTTGAAAGCCACTTTGTACTCTCTGCACCAGTTCTGTACTTTGTATAGGTTTTCCAAGTGGCTTTTCTTCCCCTGTCGTCGGCCTATCATGCTGTTGGTCTCCTCATTGAAACTATCACAGGAAACCGCTAAAATGTCTAGATAATCACCTGCAGGAGACAGGAAATGGTTTGGGTTGCAAGACAGCGATATTGCAAGACACAGACTGAGCAATCAATTCAATTTTTGTCACTTATGTTGTTCAGGCACATCATATGATGCCCATGTGTATCCCTCTCCCTGTGTACACTTATACATGTTAGTTTACAGAATGTTTTCAGCCTATAGGCCTATGCATTTACTTATCAAGATTAAGATGAAAGTGAGAACATCCCGAGTCAATCCACTTATCGAAATACATCactgatttctttattaaaaagttaATGTCACTGAAAATACgaattattgtaatttgtattcttCCCTTACCAaatgaacattttcagaaaagtaATCCAATTGTATCTGTGAAATCAGTGCAATGTGGTTTAACACCACTTCGTTGTGTGAGAACACTAAACCCTACCCTTCAGTTGAGGCCTTTACACTACTATTTGAACTACTACTGCACTCATAGTATTCAAATGATGTTGCAGGCTTTACATCTGCATTCATAGgattgaaattattttgaaaatattagtTCCAAAAGGTCTATCAGTAATATAACGTCCACTTGAATCTGTAACAACTTTACGCTGTGCAATAAACTCTTCTGCCATCTGCAGTTATGAACCGATACTGCAACCAACCGATCTGCGAGCTTGTGTATATaggccagtggttcccaaaccagtCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1495 lncRNA downstream 234498 7976780 ~ 8054337 (-) True G1268
TU1480 lncRNA downstream 491977 7796450 ~ 7796858 (-) True G1254
TU1478 lncRNA downstream 499921 7788673 ~ 7788914 (-) True G1252
TU1448 lncRNA downstream 784647 7499433 ~ 7504188 (-) True G1228
TU1449 lncRNA downstream 784647 7499433 ~ 7504188 (-) False G1228
TU1511 lncRNA upstream 1956 8291718 ~ 8292212 (-) True G1283
TU1595 lncRNA upstream 360261 8650023 ~ 8669831 (-) True G1363
TU1612 lncRNA upstream 551716 8841478 ~ 8841755 (-) True G1374
TU1619 lncRNA upstream 562435 8852197 ~ 8852441 (-) True G1381
TU1646 lncRNA upstream 667765 8957527 ~ 8964495 (-) True G1405
AMCG00003531 mRNA downstream 5091 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003528 mRNA downstream 790743 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003519 mRNA downstream 841962 7421056 ~ 7446873 (-) True AMCG00003519
AMCG00003520 mRNA downstream 881221 7381098 ~ 7407614 (-) True AMCG00003520
AMCG00003518 mRNA downstream 1061317 7221488 ~ 7227518 (-) True AMCG00003518
AMCG00003536 mRNA upstream 363996 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003538 mRNA upstream 396284 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003537 mRNA upstream 431482 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003549 mRNA upstream 697343 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003550 mRNA upstream 719355 9009117 ~ 9082850 (-) True AMCG00003550
TU1027 other downstream 2932367 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 3627468 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 4858563 3394657 ~ 3430272 (-) True G531
TU462 other downstream 5850014 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 5886940 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 2661414 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2813564 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 3634046 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3786276 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 4745191 13034953 ~ 13035489 (-) True G2236

Expression Profile