RNA id: TU1511


Basic Information

Item Value
RNA id TU1511
length 495
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G1283
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8291718 ~ 8292212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tataatgtatcaACAACAGGATTTTACAACATGTATgacaaaacaacatatataacatatactttatatgaaaataatacaaatgtttctttttttttgtaaagtcataaattagattaatataatttaatccaTATCAGGCAATTCCTATATCAGAGCCCATTCTTGcctatttacattaatttaaaaaaaacaacaacaacaacaaaacaatttcccaactttgtttttactgattGGCTATGCCAATCAAAATAATACCCATCAATTTTCTGCATCAACTTAAATGTGTTCTAGTGCACCGGAGGCAGGCCAAAGTAGTTGGTGCTTTAATCACCACTCTAGTTGCATATCTGCTTTACTCCAAATGTACTTTCCACCTCTCTTTAAAAACATCTTCTCATCAAAGCCACTGAATGTAATGGCATTCTCAACACCTACATCAAGGATGGATTTAGATGGGTCTTTTCTGCCCTCTCTGCAATCCAGAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509 lncRNA downstream 1956 8288835 ~ 8289762 (-) True G1281
TU1495 lncRNA downstream 237381 7976780 ~ 8054337 (-) True G1268
TU1480 lncRNA downstream 494860 7796450 ~ 7796858 (-) True G1254
TU1478 lncRNA downstream 502804 7788673 ~ 7788914 (-) True G1252
TU1448 lncRNA downstream 787530 7499433 ~ 7504188 (-) True G1228
TU1595 lncRNA upstream 357811 8650023 ~ 8669831 (-) True G1363
TU1612 lncRNA upstream 549266 8841478 ~ 8841755 (-) True G1374
TU1619 lncRNA upstream 559985 8852197 ~ 8852441 (-) True G1381
TU1646 lncRNA upstream 665315 8957527 ~ 8964495 (-) True G1405
TU1656 lncRNA upstream 682598 8974810 ~ 8977849 (-) True G1415
AMCG00003531 mRNA downstream 7974 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003528 mRNA downstream 793626 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003519 mRNA downstream 844845 7421056 ~ 7446873 (-) True AMCG00003519
AMCG00003520 mRNA downstream 884104 7381098 ~ 7407614 (-) True AMCG00003520
AMCG00003518 mRNA downstream 1064200 7221488 ~ 7227518 (-) True AMCG00003518
AMCG00003536 mRNA upstream 361546 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003538 mRNA upstream 393834 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003537 mRNA upstream 429032 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003549 mRNA upstream 694893 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003550 mRNA upstream 716905 9009117 ~ 9082850 (-) True AMCG00003550
TU1027 other downstream 2935250 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 3630351 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 4861446 3394657 ~ 3430272 (-) True G531
TU462 other downstream 5852897 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 5889823 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 2658964 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2811114 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 3631596 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3783826 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 4742741 13034953 ~ 13035489 (-) True G2236

Expression Profile