RNA id: TU1531


Basic Information

Item Value
RNA id TU1531
length 285
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1303
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8443740 ~ 8444024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccacacgggccagccttcgctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctccgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttgacttgctgcctaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519 lncRNA upstream 103148 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 166757 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 646886 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 693275 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 915282 7526859 ~ 7528458 (+) True G1242
TU1573 lncRNA downstream 217008 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 255442 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 399803 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 496127 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 565273 9009297 ~ 9022573 (+) True G1430
AMCG00003533 mRNA upstream 106090 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 151522 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 463543 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 896186 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 912615 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003534 mRNA downstream 205133 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 375388 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 456432 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 514117 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 521687 8965711 ~ 8977843 (+) True AMCG00003539
TU1202 other upstream 1948835 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 205101 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 811804 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1333484 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3046161 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3129707 11573731 ~ 11577329 (+) True G1989

Expression Profile