RNA id: TU1619


Basic Information

Item Value
RNA id TU1619
length 245
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1381
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8852197 ~ 8852441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttaggtCCTGCTTGTTTTGCCTTTAAATGCTGCACAATTGGATTCAgatcaggtgattgacttggccattgcagaacagtccacttctttgccttaaaaaagtcttgggttctttcgcagtatgcttcgggtcattgtccatctgcactgtgaagcgccgtccaatgagttttgaagcatttagCTGAATCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612 lncRNA downstream 10442 8841478 ~ 8841755 (-) True G1374
TU1595 lncRNA downstream 182366 8650023 ~ 8669831 (-) True G1363
TU1511 lncRNA downstream 559985 8291718 ~ 8292212 (-) True G1283
TU1509 lncRNA downstream 562435 8288835 ~ 8289762 (-) True G1281
TU1495 lncRNA downstream 797860 7976780 ~ 8054337 (-) True G1268
TU1646 lncRNA upstream 105086 8957527 ~ 8964495 (-) True G1405
TU1656 lncRNA upstream 122369 8974810 ~ 8977849 (-) True G1415
TU1698 lncRNA upstream 209047 9061488 ~ 9075883 (-) False AMCG00003550
TU1750 lncRNA upstream 322414 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA upstream 322414 9174855 ~ 9179981 (-) False G1492
AMCG00003537 mRNA downstream 100994 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003538 mRNA downstream 145888 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003536 mRNA downstream 179321 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003531 mRNA downstream 568453 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003528 mRNA downstream 1354105 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003549 mRNA upstream 134664 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003550 mRNA upstream 156676 9009117 ~ 9082850 (-) True AMCG00003550
AMCG00003548 mRNA upstream 299443 9151884 ~ 9155291 (-) True AMCG00003548
AMCG00003553 mRNA upstream 329660 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003552 mRNA upstream 401413 9253854 ~ 9254096 (-) True AMCG00003552
TU1027 other downstream 3495729 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4190830 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 5421925 3394657 ~ 3430272 (-) True G531
TU462 other downstream 6413376 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 6450302 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 2098735 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2250885 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 3071367 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3223597 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 4182512 13034953 ~ 13035489 (-) True G2236

Expression Profile